Rful006438.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:8769442-8771058[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 8e-05 0.0023 19.1 1.3 1 23 64 86 64 86 0.99
2 17 0.0011 0.031 15.6 2.3 1 23 92 114 92 114 0.99
3 17 0.069 2 9.9 5.5 1 23 120 142 120 142 0.99
4 17 0.00013 0.0039 18.4 2.7 1 23 148 170 148 170 0.99
5 17 7.3e-05 0.0021 19.2 2.7 1 23 176 198 176 198 0.99
6 17 1.1e-05 0.00033 21.8 0.8 1 23 204 226 204 226 0.99
7 17 6.5e-05 0.0019 19.4 3.5 1 23 232 254 232 254 0.99
8 17 5.7e-05 0.0016 19.6 0.8 1 23 260 282 260 282 0.99
9 17 0.00012 0.0033 18.6 1.8 2 23 289 310 288 310 0.96
10 17 9.5e-05 0.0027 18.9 2.2 2 23 317 338 316 338 0.97
11 17 0.00014 0.0041 18.3 2.8 1 23 344 366 344 366 0.99
12 17 0.0022 0.065 14.6 2.8 1 23 372 394 372 394 0.99
13 17 7.5e-06 0.00022 22.3 1.3 1 23 400 422 400 422 0.99
14 17 0.0002 0.0059 17.8 3.4 1 23 428 450 428 450 0.99
15 17 0.00093 0.027 15.8 2.9 1 23 456 478 456 478 0.99
16 17 0.00051 0.015 16.6 0.5 1 23 484 506 484 506 0.99
17 17 0.0067 0.19 13.1 2.4 1 23 512 534 512 534 0.98

Sequence Information

Coding Sequence
ATGTCAGATTTGTTACAGGGTGCTCCATTACGTTTACATAGTCTGTCCCAAATTAAGACTGAAGAAATAGAATTGAACTTGGATAAGTTGCATCATCATCCCACTGATATTCAAGAAGAGATTTCAGTCCACCCGGAGAAGACAAAAAGAAATTGTAATCCACTTACTAAACGTAAAATTTCTAAACTATTCAAGTGTGAAATTTGTGATTACAAATCTGGACAGAAGGGACATTTATGGGATCATTTAAGAACGCATTCGGGTCATAAACCGTTTAAATGTGAACTTTGTGAGTACACATGTGCACTAAAAGGAAATTTAAAAATTCATTTAAAAAAGCATTCGGGTTATAAACCGTTTAAATGTGACATTTGTAACTACCAATCTGCACATAAGGAAAGTTTAAAATGTCATTTAAGAACGCATTCTGGTGATAAACCGTTCAAGTGTGATGTTTGTGATTACAAATCTGCTCACCAGAAAAGTTTACAAAATCACGTAAGAACGCATTCAACCGATAAACCGTTTAAGTGTGAATTTTGTGACTACCAATCGACACGAAAGGACAATTTAAAAAATCACTTAAGCACACATACCGGTGATAAGCCGTTTAGGTGTGAAATTTGCGACTTTTCGTCTGCACGTAAGGAAAATTTAAAAATTCATTTAAAAACGCATTCGGGGGATAAACCGTTTCAGTGTGAAATTTGTGATTACAAATCCGCACATAAGGCTCACTTACGGGATCACTTAAGAACGCATTCAGGTGATAAGCCGTTTCAGTGTGAAATTTGTGATTACAAAGGCGCACGAAAACAAGATTTAAGGAATCATTTAAAAACTCACTCGGTTGATAAACCGCTGAAGTGTGAAATTTGTGACCAAAAATTTGCACGAAAAGTATATTTAAGAAAGCATTTTTTTACACATACAGGGGATAAACCGATTCAGTGTGAAATTTGTGACTATAAATGTGCACGAAAACAAGATTTAAGAAGTCACTTAAAAACCCATACGGGTGATAAACCGTTTCAGTGTGAACTTTGTGACTACAAATCTGCACACAAGGAAAGCTTAAAAAGTCATTTAAGAACTCATTCAGGTGATAAGCCGTTTCAGTGTGAAATTTGCGACTTTAAATCTGCACATAGGAAGAGTTTAAAGGGTCACTTAAAAACGCATTCTGGTGATAAACCGTTTCAGTGTGAAATGTGTGATTACAAATCTGCACAGAAGGAAAATTTAAAAAATCACTTACGAACGCATTCTGGAAATAAACCGTTTCAGTGTGAATTTTGTGACTATAAGTGTGCACTAAAGGGAAACTTAAAAAACCATTTAAGGACCCATACAGGTGATAAACCGTTTCAGTGTAATATTTGTGAGTACAAATCTGCGCATATGAAAAGTTTGCAAAATCATTTAAGAACGCATTCTGGAGATAAACCCTTCAAGTGTGGAATTTGTGACTACAAATCTGCACAAATAGGAAGTTTAAAAAGTCATTTAAGAAGGCATTCGGGCGATAAACCGTTCAAGTGCGGAATTTGTGATTTTAAATCTGCTCATAAGAACAGTTTAAAAGGTCATTTAAAATCCCATACTATCTCAAAATAG
Protein Sequence
MSDLLQGAPLRLHSLSQIKTEEIELNLDKLHHHPTDIQEEISVHPEKTKRNCNPLTKRKISKLFKCEICDYKSGQKGHLWDHLRTHSGHKPFKCELCEYTCALKGNLKIHLKKHSGYKPFKCDICNYQSAHKESLKCHLRTHSGDKPFKCDVCDYKSAHQKSLQNHVRTHSTDKPFKCEFCDYQSTRKDNLKNHLSTHTGDKPFRCEICDFSSARKENLKIHLKTHSGDKPFQCEICDYKSAHKAHLRDHLRTHSGDKPFQCEICDYKGARKQDLRNHLKTHSVDKPLKCEICDQKFARKVYLRKHFFTHTGDKPIQCEICDYKCARKQDLRSHLKTHTGDKPFQCELCDYKSAHKESLKSHLRTHSGDKPFQCEICDFKSAHRKSLKGHLKTHSGDKPFQCEMCDYKSAQKENLKNHLRTHSGNKPFQCEFCDYKCALKGNLKNHLRTHTGDKPFQCNICEYKSAHMKSLQNHLRTHSGDKPFKCGICDYKSAQIGSLKSHLRRHSGDKPFKCGICDFKSAHKNSLKGHLKSHTISK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-