Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:16588699-16590171[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00038 0.011 17.0 1.8 1 23 41 63 41 63 0.97

2 16 0.0014 0.042 15.2 2.6 1 23 69 91 69 91 0.97

3 16 0.00069 0.02 16.2 0.9 1 23 97 119 97 119 0.97

4 16 0.013 0.38 12.1 0.8 1 23 125 147 125 147 0.97

5 16 4.1e-05 0.0012 20.0 2.9 1 23 153 175 153 175 0.96

6 16 0.0001 0.003 18.8 2.9 1 23 181 203 181 203 0.98

7 16 2.5e-05 0.00073 20.7 1.6 1 23 209 231 209 231 0.98

8 16 0.00012 0.0034 18.6 1.0 1 23 237 259 237 259 0.98

9 16 0.0003 0.0088 17.3 1.2 1 23 265 287 265 287 0.97

10 16 6e-06 0.00017 22.7 1.6 1 23 293 315 293 315 0.98

11 16 0.00012 0.0034 18.6 1.6 1 23 321 343 321 343 0.98

12 16 5.4e-05 0.0016 19.7 3.1 1 23 349 371 349 371 0.98

13 16 1.5e-05 0.00044 21.4 2.4 1 23 377 399 377 399 0.98

14 16 1.3e-05 0.00037 21.6 0.7 1 23 405 427 405 427 0.98

15 16 8.6e-06 0.00025 22.2 1.6 1 23 433 455 433 455 0.98

16 16 0.0016 0.045 15.1 5.1 1 23 461 483 461 483 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00038	0.011	17.0	1.8	1	23	41	63	41	63	0.97
2	16	0.0014	0.042	15.2	2.6	1	23	69	91	69	91	0.97
3	16	0.00069	0.02	16.2	0.9	1	23	97	119	97	119	0.97
4	16	0.013	0.38	12.1	0.8	1	23	125	147	125	147	0.97
5	16	4.1e-05	0.0012	20.0	2.9	1	23	153	175	153	175	0.96
6	16	0.0001	0.003	18.8	2.9	1	23	181	203	181	203	0.98
7	16	2.5e-05	0.00073	20.7	1.6	1	23	209	231	209	231	0.98
8	16	0.00012	0.0034	18.6	1.0	1	23	237	259	237	259	0.98
9	16	0.0003	0.0088	17.3	1.2	1	23	265	287	265	287	0.97
10	16	6e-06	0.00017	22.7	1.6	1	23	293	315	293	315	0.98
11	16	0.00012	0.0034	18.6	1.6	1	23	321	343	321	343	0.98
12	16	5.4e-05	0.0016	19.7	3.1	1	23	349	371	349	371	0.98
13	16	1.5e-05	0.00044	21.4	2.4	1	23	377	399	377	399	0.98
14	16	1.3e-05	0.00037	21.6	0.7	1	23	405	427	405	427	0.98
15	16	8.6e-06	0.00025	22.2	1.6	1	23	433	455	433	455	0.98
16	16	0.0016	0.045	15.1	5.1	1	23	461	483	461	483	0.98

Sequence Information

Coding Sequence: ATGGAAGAAATGGAATTTAAATTGGAAGATTTGCATCATTCTATCGACATCAAAGATGAACCTTCAATTTTAGAACTTCAGTCAAATAGAAAATACAAACCGAAAACGGGCAGGGCACGGTTCGCATGTGAAATTTGTAATTATAAAAGTGCACGTAAAGAAACTTTAAAGAGGCATTTTAAAACCCATACTGGGGAAAAACCATTTGCGTGTGAGGTATGTGAGTACAAATGTGCAAAAAAGGAATATTTAAAAAATCATTTAAAAACTCATACTGGGGAGAAGCCGTTCGCGTGTGATTTATGCGACTTTAAATGTATCCAAAGGGGAGATTTAAAAATTCATTTAAGGATTCACACCGGTGAGAAACCGTTTGCGTGTGAAATTTGTGATTACAAATGTGCACAAAGGGGAGATTCGATTAATCATTTAAGAACTCACACAGGTGAGAAACCGTTTTTGTGTGAAATTTGTGATTACAAATGCGCGCGTAAAAGGAATTTAAAAATACATTTGAGAACTCACACCGGCGAGAAACCGCATGTGTGTGAAATTTGTGATTACAAATGTGCACGTAAAGAAAGTTTAAACATACATTTAAAAACTCACACGGGCGAAAAACCATACATGTGTGAAATATGTGACTACAAATGTGTGCGGAAAGGAGATTTAAAAAGGCATTGGTTAACTCATACCGGCGAGAAACCATTTAAGTGTGATATTTGTGAACATAAATTTGCAGGACGGGGAGACTTAAAAAGACATTTAGTAACTCATACCGGAGAAAAACCGTTTGCATGTGGAATATGTGACTTTAAATGTATACAAAAGGGAGGTTTAAAATCCCATTTAAGAACTCATACCGGTGAAAAACCGTTTGAGTGTGAAATTTGTGATCACAAATTTTCACGAAAGGGAGATTTAAAAAGTCATTTAGTAACTCACAGCGGCGAAAAACCGTTTGAATGTGAACTTTGTGATTACAAGTGCGCACGTAAAGCGAAATTAAAAATCCATTTAAGAATTCATACAGAGGATAAATCGTTTGCTTGTGAAATCTGCGACTACAAATGTAGTACAATGGGAAATTTTAAAAGGCATTTGAGAACACACACTGGCGAGAAATCGTTTGCGTGTGAAATTTGTGACTATAAATGTACCAAAAAAGGAAATTTAAAAATTCACTTGAGAACTCATACTGGTGAGAAACCATTCGAGTGTGAGATTTGTGATTACAAATGTATACAAAAAGGAAATTTAATAATTCATGTGAGAACTCATACAGGTGAGAAACCATTCGAGTGTGAAATTTGTGACCATAAATTCGCACGAAAGGGAGATTTAAAAAGTCATTTAACAACTCATACCGGCGTGAAACCGTTTTCGTGTGAAATTTGTTACTACAAGTGTATAAAAAGGGGAAATTTTAAAAGGCATTTGAGAACTCACACCGGAGAAAAACTACTACTGTAA
Protein Sequence: MEEMEFKLEDLHHSIDIKDEPSILELQSNRKYKPKTGRARFACEICNYKSARKETLKRHFKTHTGEKPFACEVCEYKCAKKEYLKNHLKTHTGEKPFACDLCDFKCIQRGDLKIHLRIHTGEKPFACEICDYKCAQRGDSINHLRTHTGEKPFLCEICDYKCARKRNLKIHLRTHTGEKPHVCEICDYKCARKESLNIHLKTHTGEKPYMCEICDYKCVRKGDLKRHWLTHTGEKPFKCDICEHKFAGRGDLKRHLVTHTGEKPFACGICDFKCIQKGGLKSHLRTHTGEKPFECEICDHKFSRKGDLKSHLVTHSGEKPFECELCDYKCARKAKLKIHLRIHTEDKSFACEICDYKCSTMGNFKRHLRTHTGEKSFACEICDYKCTKKGNLKIHLRTHTGEKPFECEICDYKCIQKGNLIIHVRTHTGEKPFECEICDHKFARKGDLKSHLTTHTGVKPFSCEICYYKCIKRGNFKRHLRTHTGEKLLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -