Rful010427.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:15477109-15485624[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00057 0.016 16.4 6.9 1 23 213 235 213 235 0.99
2 15 0.0039 0.11 13.8 3.3 1 23 241 263 241 263 0.99
3 15 0.00017 0.005 18.1 4.7 1 23 269 291 269 291 0.99
4 15 2.2e-05 0.00064 20.9 1.6 1 23 297 319 297 319 0.99
5 15 4.9e-05 0.0014 19.8 3.3 1 23 325 347 325 347 0.99
6 15 1.6e-05 0.00045 21.3 2.7 1 23 353 375 353 375 0.99
7 15 0.00037 0.011 17.0 4.8 1 23 381 403 381 403 0.99
8 15 8.5e-07 2.4e-05 25.3 2.0 1 23 409 431 409 431 0.99
9 15 2.3e-05 0.00067 20.8 2.7 1 23 437 459 437 459 0.99
10 15 3e-06 8.6e-05 23.6 2.3 1 23 465 487 465 487 0.99
11 15 0.00013 0.0038 18.4 2.0 1 23 493 515 493 515 0.99
12 15 1.6e-05 0.00047 21.3 1.3 1 23 521 543 521 543 0.99
13 15 4.9e-05 0.0014 19.8 3.3 1 23 549 571 549 571 0.99
14 15 0.0047 0.14 13.5 0.4 5 23 581 599 579 599 0.96
15 15 3e-06 8.7e-05 23.6 2.9 1 23 605 627 605 627 0.99

Sequence Information

Coding Sequence
ATGGATAAATTGATACCATTGATCAAGTTGGAGAAATTAGAAGAAGCTATCGATGGTTTGCGAGCCGCCAGTGATGATGAAGAAATTAGAACAGACAAAATGGAGGCCATGGACGCCAAATTAGAAGATTTGCACCACTCCATCGATATTAAAGAAGATGACGATGCTAATTTAGAATATCAGGAGGATATCGATGAGTCAGATATTACATTAGTTTTATTGTTCGAAATGTCGTACGAGGAAAGTGTTCGTGAACTTTTACAAGAACTTGATAAAAATGACGGTGATGATCCAAATTTCATCGATTCTGATGATGATGCGTCTGATCATTGTGAAGAAAGTGACCACCAGACAGATAGTGAACAATCTGATAGTGACGAAAGTTTTCCCCAAAAGCAACGTAAATATATGATCGGTAAAGATTCCAAAACAAAATGGGGAAGAAAACCATCAAATTCAGCGGGTACTCCATCACATACAAGTCGTCACTCCAAAATTAAGAGTGACGAAATAGAATTGAATTTGGATGAGCTACATCATCTTCCCGTTCATAGTCGAGAAGAGATTTCAGTTCATTTTCAGAAGACAAAAACTGATTGTAATCCGCTTACTACGCCTCAAATTTCCAACTATAAGTTTAAGTGTGGAATTTGTGACTATAAATGTGGACGAAAGCATGATTTCAAAAGGCATTTAAGGACGCATTCAGGAGATAAACCGTTTCAGTGTGGAATTTGTGACTACAAATCTGGACGGAAGCAACATTTCAAAATGCATTTAATGACGCATTCAGGAGAGAAACCTTTTCAGTGTGATATTTGTGACTATAAATGTGCACATAGGAATAGTTTAAAAATTCATTTAAGAACGCATTCAGGAGATAAACCGTATGAGTGTGAAATTTGTGACTATAAAAGTGCACATAGGAGTAGTTTAAAAATTCATTTAAGAACGCATTCAGGAGATAAACCTTTTCAGTGTGAAATTTGTGACTATAAATGTGCACAGAGGAATAGTTTAAAAAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTTAAGTGTGAAATTTGTGACTACAAATGTGCACAGAAGCAAAATTTAATAAGTCATTTAAGAACGCATACAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACTGAAGCATTATTTAGAAAGGCATTTAAGAACTCATTCAGGAGATAACCCGTTTCAGTGTGAAATTTGTGACTATAAATTTACAGATAGGAATAGTTTAAAAAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTTAAGTGTGAAATTTGTGACTACAAATGTGCACAGAAGAATAATTTAGTAAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTCCAGTGTGAAGTTTGTGACTATAAATGTACGGATAAGGGAAATTTAGTAAGGCATTTAAGAACGCATTCAGGCGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACTGAAGCAAAATTTAATAAGTCATTTAAGAACGCATACAGGAGATAAACCGTATGAGTGTGAAATTTGTGACTATAAAAGTGCACATAGTAGTAGTTTAAAAATTCATTTAAGAACGCATTCAGGAGATAAACCTTTTCAGTGTGAAATTTGTGACTATAAATGTGCACAGAGGAATAGTTTAAAAAGTCATTTAAGAACGCATTCAGGAGATGAACCGTATGAGTCTGAAATTTGTGACTATAAAAGTGCACAGAAGCAATCTTTAAAAAAGCACTTAAGAACGCATACAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTACGCAGAAGGGAAATTTAGTAAAGCATTTAAGAACGCATTCAGGAGATAAAAAATAG
Protein Sequence
MDKLIPLIKLEKLEEAIDGLRAASDDEEIRTDKMEAMDAKLEDLHHSIDIKEDDDANLEYQEDIDESDITLVLLFEMSYEESVRELLQELDKNDGDDPNFIDSDDDASDHCEESDHQTDSEQSDSDESFPQKQRKYMIGKDSKTKWGRKPSNSAGTPSHTSRHSKIKSDEIELNLDELHHLPVHSREEISVHFQKTKTDCNPLTTPQISNYKFKCGICDYKCGRKHDFKRHLRTHSGDKPFQCGICDYKSGRKQHFKMHLMTHSGEKPFQCDICDYKCAHRNSLKIHLRTHSGDKPYECEICDYKSAHRSSLKIHLRTHSGDKPFQCEICDYKCAQRNSLKSHLRTHSGDKPFKCEICDYKCAQKQNLISHLRTHTGDKPFQCEICDYKCALKHYLERHLRTHSGDNPFQCEICDYKFTDRNSLKSHLRTHSGDKPFKCEICDYKCAQKNNLVSHLRTHSGDKPFQCEVCDYKCTDKGNLVRHLRTHSGDKPFQCEICDYKCALKQNLISHLRTHTGDKPYECEICDYKSAHSSSLKIHLRTHSGDKPFQCEICDYKCAQRNSLKSHLRTHSGDEPYESEICDYKSAQKQSLKKHLRTHTGDKPFQCEICDYKCTQKGNLVKHLRTHSGDKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-