Rful004627.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:3340015-3348305[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00023 0.0067 17.7 2.8 1 23 56 78 56 78 0.97
2 19 0.0012 0.035 15.4 2.2 1 23 84 106 84 106 0.99
3 19 0.0014 0.041 15.2 2.9 1 23 112 134 112 134 0.98
4 19 0.0017 0.049 14.9 2.8 1 23 140 162 140 162 0.99
5 19 6.7e-05 0.0019 19.4 0.1 1 23 169 191 169 191 0.97
6 19 0.00032 0.0093 17.2 2.9 1 23 197 219 197 219 0.98
7 19 0.00038 0.011 17.0 2.0 1 23 225 247 225 247 0.98
8 19 0.0019 0.054 14.8 3.2 1 23 253 275 253 275 0.99
9 19 0.00017 0.0049 18.1 0.1 1 23 281 303 281 303 0.97
10 19 3.2 94 4.6 0.6 1 14 309 322 309 323 0.89
11 19 1e-05 0.00029 22.0 1.9 1 23 377 399 377 399 0.98
12 19 2e-05 0.00057 21.0 2.3 1 23 405 427 405 427 0.98
13 19 0.00021 0.0061 17.8 1.4 1 23 433 455 433 455 0.99
14 19 6.2e-05 0.0018 19.5 2.9 1 23 461 483 461 483 0.99
15 19 0.0076 0.22 12.9 5.6 1 23 489 511 489 511 0.99
16 19 0.00037 0.011 17.0 0.2 1 23 517 539 517 539 0.97
17 19 0.0045 0.13 13.6 7.3 1 23 545 567 545 567 0.98
18 19 4.6e-05 0.0013 19.9 0.7 1 23 573 595 573 595 0.97
19 19 0.0048 0.14 13.5 4.0 1 23 601 623 601 623 0.99

Sequence Information

Coding Sequence
ATGGATACTCCAAGCCATTCAAATGGTCACTCTCACATTAAGGTAGAAGATGGCTGCAGCGCAGTGGAATTTCAGCTGGAAGATTTACATCATTCGATTGACATTAAGGAAGAGAACTGCCAATCAGACAGCGAACGCAAATCGGAAGGAGTAAACGCGAAACCGTTCGCATGTGGAACTTGTAACTTTAAATTTGCACGAAAGACGCATTTAATAAGTCACTTAAGAAGTCACACCGGCGAGAAACCATATAAGTGTGAAATGTGTGACTACAAATGTGCATACAAAGGAGACATAAAACGTCATTTAATAACACATACGAGGGAGAAACCGTTCACGTGTGAGTTTTGTCTGATGAAATATTCCCGAAAATACGACTTAAAAATGCATCTGCGAAACCATACTGGCGAGAAACCCTTCAAGTGTGCAGATTGTGACTATAAATGTACAACGAATGATATCCTAAAAAATCACGTAAGAACTCATACAGGTTATGATAGACCGTTCGCATGTGAAGTTTGCGATTACAAATTTCCAAACGAAGCAAAATTAAAAATTCACTTAAGGATCCATACTGGCGAGAAACCGTACAAATGTGACGTTTGTGATTACAAATGTGCACAAAGCGGAGATTTGAAACGTCATTTTACAACTCATACTGGGGAACGACAGTTCTCATGTGAATTTTGTACTTTGAAATTTTCCCGAAAATTTGCTTTAAAAATGCATGTCCGAATTCATACTGGAGAGAAGCCATTCAAGTGTGAATTTTGTGATTATAAATGTGCAAAGAGTGGTGATTTAAAAATTCACTCAAGAACTCATACGGGCGAAAAGCCATTTGCATGTGAAATTTGCGGCTATAAAAGTGCACAAAAGGGATATTTAAATAGACATTTACTGATCCATACGGGCGATAAGCCTTTCGCGTGTAGCATTTGTGATTATAAAACTTCACGAAAAGAAACTCCGTGCCATTCCAAGGACTACCCCGAAGTCAAAGTCGAAGAAGATGAAATGGAAATTAAGTTGGAAGATTTGCATCACACTGTTGATATTAAAGAAGAAACTTCTTTTCTGAACTTTCAGTTGGATGGAGAATCCAAAGCAGACGCAAGCAAAAAATCGTTCGTGTGTGAAATTTGTGACTACAAATTTGAAAAACGATCGTATTTAGAGAGGCACTTTAGAACTCATACAGGCGATAAACCATTCATATGTAAAATTTGTGACTATAAATGTGCCCAAAAGGGATCATTAAAGCGTCATTTGAGAATTCATAGTGGAGAGAAACCATTTAAGTGTGAATTTTGTGACTATAAAGTTGTAGATAAAAGATATTTAGAGTCACATTTGCGAACTCATGCGGACATTAAACCTTTCAAATGTAAAATTTGTGACTCTAAATTTGAACACAATGAAGAATTAAAAATTCACTTAAAAACCCACGATGGGGAAAAAGCGTTTAAATGCGAATTTTGTGACCATGAATGTACTCAAAGCGCAGTTTTCCAAAGACATTTAAGGACCCATACAGGTGAAAAACCGTTCGCCTGTGAATTTTGTGACTATAAAGTTGCAGAGAAGGGAAATTTAAAAGTTCATTTAAGAACTCACACGGGGTACAAACCGTTCAAGTGTAAAATATGTGACTGTAGCTTTGCACGTAAGGAACACCTACTGTGTCATTTAAGAATCCACTCTGGGGAGAAGCCGTTTATATGTGACATTTGTGACTATAAATGTGCGCGACAAGGAGATTTAAAACGCCACGTTGCAACTCATACGGGAGAAAAACCGTTTAAATGTGAATTTTGTGACCATAAAAGCGCACGTAGGGCAAGTTTAAAATATCATTTAAAAACTCATGCAGAACACAGTGGACCTTCCACAACCAAAAAGTAA
Protein Sequence
MDTPSHSNGHSHIKVEDGCSAVEFQLEDLHHSIDIKEENCQSDSERKSEGVNAKPFACGTCNFKFARKTHLISHLRSHTGEKPYKCEMCDYKCAYKGDIKRHLITHTREKPFTCEFCLMKYSRKYDLKMHLRNHTGEKPFKCADCDYKCTTNDILKNHVRTHTGYDRPFACEVCDYKFPNEAKLKIHLRIHTGEKPYKCDVCDYKCAQSGDLKRHFTTHTGERQFSCEFCTLKFSRKFALKMHVRIHTGEKPFKCEFCDYKCAKSGDLKIHSRTHTGEKPFACEICGYKSAQKGYLNRHLLIHTGDKPFACSICDYKTSRKETPCHSKDYPEVKVEEDEMEIKLEDLHHTVDIKEETSFLNFQLDGESKADASKKSFVCEICDYKFEKRSYLERHFRTHTGDKPFICKICDYKCAQKGSLKRHLRIHSGEKPFKCEFCDYKVVDKRYLESHLRTHADIKPFKCKICDSKFEHNEELKIHLKTHDGEKAFKCEFCDHECTQSAVFQRHLRTHTGEKPFACEFCDYKVAEKGNLKVHLRTHTGYKPFKCKICDCSFARKEHLLCHLRIHSGEKPFICDICDYKCARQGDLKRHVATHTGEKPFKCEFCDHKSARRASLKYHLKTHAEHSGPSTTKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-