Rful006303.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:20869661-20871427[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.4e-05 0.0004 21.5 2.6 1 23 74 96 74 96 0.99
2 19 1.8e-05 0.00052 21.1 5.0 1 23 102 124 102 124 0.99
3 19 0.00061 0.018 16.3 1.7 1 23 130 152 130 152 0.99
4 19 0.015 0.44 11.9 2.6 1 23 158 180 158 180 0.99
5 19 5.2e-05 0.0015 19.7 5.0 1 23 186 208 186 208 0.99
6 19 6.7e-06 0.00019 22.5 1.9 1 23 214 236 214 236 0.98
7 19 0.0098 0.28 12.5 4.0 1 23 242 264 242 264 0.99
8 19 1.2e-05 0.00036 21.7 3.3 1 23 270 292 270 292 0.99
9 19 3.7e-05 0.0011 20.2 1.0 1 23 298 320 298 320 0.99
10 19 4.6e-07 1.3e-05 26.2 3.8 1 23 326 348 326 348 0.99
11 19 0.00014 0.0039 18.4 3.1 1 23 354 376 354 376 0.98
12 19 2.2e-05 0.00065 20.9 2.4 1 23 382 404 382 404 0.99
13 19 0.0022 0.062 14.6 2.9 1 23 410 432 410 432 0.99
14 19 1.8e-05 0.00053 21.1 3.4 1 23 438 460 438 460 0.98
15 19 0.00085 0.025 15.9 2.5 1 23 466 488 466 488 0.99
16 19 0.00039 0.011 17.0 2.3 1 23 494 516 494 516 0.99
17 19 0.088 2.6 9.5 3.2 1 23 522 544 522 544 0.98
18 19 0.16 4.5 8.8 2.8 1 23 550 572 550 572 0.98
19 19 2.2 64 5.1 0.6 1 10 578 587 578 588 0.92

Sequence Information

Coding Sequence
ATGGGACGTTTAGTGATGGTAGCTTTGTTACAGGGTACTAAATGGCGTTCAAATAACCACTCCCAATTTGAAACAGAAGAGATAGAATTGCAGTTGGAAGATTTGCACCATTGTTCCATTAAAATTCAAGAAGACACCTCAGTTCACCGTTGCAAAACAAAAACAAGTTCTATACCGCTTATAAGTGAAATTTCTAATTGTAACTCTGGTAAGAAAGCGTTCCAATGTGAAATTTGTGACTACAAATCTGCACAAAAGGCACATTTAAAACGTCATTTAAAAACTCATACAGGTGAGAAAGAATTCCAGTGTGAAGTTTGTGACCACAAATTTGCCCAAAAGGAACATTTAAAATCTCATTTAAAAACTCATACAGGCGAGAAAGCGTTCCAGTGTGAAATTTGTGACTCCAAATTTATAGAAAAGAGTCGTTTAAAATATCATTTAAAAACTCATACAGGCGAGAAAGAGTTCCAGTGTGAAATTTGTGACTTCAAATCTGCACATAAGAATAGTATAAAACTACATTTAAAAACTCATACAAGCGAGAAAGTTTTCCAGTGTAAAATTTGTGACTACAAATCTGCACAAAAGAGACATTTAAAACGTCATTTAAAAACCCATACAGGCGAGAAAGCGTTCCAGTGTGAAATTTGTGACTACAAATTTACAGAAAAGCAAACTTTAAAACGTCATTTAAAAATTCATGCAGGCGAGAAAGCGTTCCAATGTGAAATTTGTAACTACAAATCTGCACGAAAGGAACATTTAAAATTCCATTTAAAAACTCATACAGGCGAGAAAGCGTTTCAATGTGAAATTTGTGACTACAAATCTGCACGAAAGGAACATTTAAAACGCCATTTAAAAACTCATACAGGCGAGAAAGCGTTCCAATGTGAAATTTGTGACTACAAATCTGCACGAAAGGAATATTTAAAAATCCATTTAAAAACTCATACAGGCGAAAAAGCGTTCCAATGTGAAATTTGTGACTACAAATTTGCACGGAAGGAACATTTAAAACGTCATTTAAAAACTCATACAGGCGAGAAAGAATTCCAGTGTGAAGTTTGTGACCACGAATTTGCACAAAAGGAACATTTAAAATATCATTTAAAAGCTCATACAGGCGAGAAAGCGTTCCAATGTGAAATTTGTGACAACAAATTTACAGAAAAGCAGACTTTAAAACGTCATTTAAAAACTCATACAGGCGAGAAAGAGTTTCAGTGTGAAATTTGCGACTTCAGATCTGCACATAAGAATAATATAAAAAATCATTTAAAAACTCATACAGGCCAGAAAGACTTCCAGTGTGAAATTTGTGGCCACAAATTTAGAGAAAAGCAAACTTTAAAACGTCATTTAAAAATTCATACAGGCGAGAAAGAGTTTCAGTGTGAAATTTGCGGCTTCAGATCTGCACATAAGAATAATATAAAAAATCATTTAAAAACTCATAAAGGCCAGAAAGACTTCCAGTGTGAAATTTGTAACTACAAATCTGCAGAAAAGGGACATTTGAAAAGTCATTTAAAAACTCATTCAGGCGAGAAAGCGTTCCATTGTGAAATTTGTGACTTTAAATCTGCATATAAGAAAAGTGTAAAACTACATTTAAAAACTCATACAGGCGAGAAAGCGTTCCATTGTGAAATTTGTGACTTCAAATCTGCATATAAGAATAGTATAAAACTACATTTAAAAACTCATACAGGCGAAAATACTTTCCAGTGTGAAATTTGTGACCACAAATTTGCATAA
Protein Sequence
MGRLVMVALLQGTKWRSNNHSQFETEEIELQLEDLHHCSIKIQEDTSVHRCKTKTSSIPLISEISNCNSGKKAFQCEICDYKSAQKAHLKRHLKTHTGEKEFQCEVCDHKFAQKEHLKSHLKTHTGEKAFQCEICDSKFIEKSRLKYHLKTHTGEKEFQCEICDFKSAHKNSIKLHLKTHTSEKVFQCKICDYKSAQKRHLKRHLKTHTGEKAFQCEICDYKFTEKQTLKRHLKIHAGEKAFQCEICNYKSARKEHLKFHLKTHTGEKAFQCEICDYKSARKEHLKRHLKTHTGEKAFQCEICDYKSARKEYLKIHLKTHTGEKAFQCEICDYKFARKEHLKRHLKTHTGEKEFQCEVCDHEFAQKEHLKYHLKAHTGEKAFQCEICDNKFTEKQTLKRHLKTHTGEKEFQCEICDFRSAHKNNIKNHLKTHTGQKDFQCEICGHKFREKQTLKRHLKIHTGEKEFQCEICGFRSAHKNNIKNHLKTHKGQKDFQCEICNYKSAEKGHLKSHLKTHSGEKAFHCEICDFKSAYKKSVKLHLKTHTGEKAFHCEICDFKSAYKNSIKLHLKTHTGENTFQCEICDHKFA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-