Rful011154.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:102291711-102295537[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0079 0.23 12.8 1.3 1 23 121 143 121 143 0.96
2 15 0.00022 0.0063 17.7 2.2 1 23 165 187 165 187 0.96
3 15 7e-05 0.002 19.3 1.2 1 23 193 215 193 215 0.99
4 15 0.00032 0.0093 17.2 1.9 1 23 221 243 221 243 0.99
5 15 8.8e-08 2.5e-06 28.4 1.7 1 23 249 271 249 271 0.99
6 15 0.00014 0.0041 18.3 0.5 1 23 277 299 277 299 0.99
7 15 4.8e-05 0.0014 19.8 2.5 1 23 305 327 305 327 0.99
8 15 3.2e-06 9.4e-05 23.5 1.4 1 23 333 355 333 355 0.99
9 15 0.00032 0.0093 17.2 2.5 1 23 361 383 361 383 0.98
10 15 0.00035 0.01 17.1 2.6 1 23 389 411 389 411 0.99
11 15 1.7e-05 0.00048 21.3 2.4 1 23 417 439 417 439 0.99
12 15 0.0002 0.0057 17.9 1.7 1 23 445 467 445 467 0.99
13 15 4.5e-05 0.0013 19.9 0.7 1 23 473 495 473 495 0.99
14 15 1.5e-07 4.3e-06 27.7 1.0 1 23 501 523 501 523 0.99
15 15 2.2e-05 0.00062 20.9 1.1 1 23 529 551 529 551 0.99

Sequence Information

Coding Sequence
ATGCAGAGCTCAGTGTTGACTTCTTCAAATGTTCTTTCTGGTTTGAAGAAGAAAGCAGCTGAGCGAAATGCTAAGATAACGGCCAAGGTAGCCAAGAAAACGACACCAGCTAAGCGCGCTAATCCAACTCCAGCCAAGCGTGTCAAGGCAAAAGATAGCCTTGTTAAATGTAGCGTTGTTATATGGCGTTCAAATAACCACTCCCAATTTAAAACAGAAGAAATAGAATTGAAGTTGGAAGATTTGCACCATCATTCCATTAACATTCAAGAGGACACTTCAGTTCACCGTCGCAAAACAAAAACAAATGCTATACCGGTTATAAATGAAATTTCTAACTGCAATTCTGGTAAAAAACCGTTCAACTGCGGAATTTGTGAGTACAAATGTGCACAAAAGAATAGTTTAAACATTCATTTAGAAAATCATTTAAAAATTCGTGACTACAAATCTGCAAAATTGGGAAATTTAAAACGAACAGGCGAGAAAGCGTTTCTGTGTGAAATTTGTGACTACAAATGTGCACAAAAGGGAAGTTTAAAAAGTCATTTAAAAACTCATACAAGCGAGAAAGCGTTCCAGTGTGAGATTTGTGACTACAAATCTGCATATAAGCAAAGTTTAGAACGTCATTTAAAAACTCATACAGGTGAGAAAGCGTTTCAGTGTAAAATTTGTGGCTTTAAATCTGCACGAAAGGGAAGTTTAAAACTACATTTTAAAACTCATACAGGCGAGAAAGCGTTCCAGTGTGAAATTTGTGGGTATAAATTTACACAAAAAGGAAATTTAAAAAGTCATTTAAAAACTCATACAGGTGAGAAAGCTTTCCAGTGTGAAATGTGTGGCTTCCAATCTGCACAAAAGGGAAGTTTAAAAGTACATTTAAAAACTCATTCAGGCGAGAAAGCGTTCCAGTGTGAAATTTGTGACTACAAATCTGCACATAAGAATAATTTAAAAGTACATTTAAAAACTCATACAGGCGAGAAAGCGTTCCAGTGTGAAGTTTGTGATTATAAATTTGCACGAAAAGAAACTTTAAAACTACATTTAAAAACTCATACAGGCGAGAAAGCGTTCCAGTGCGAAATTTGTGACTACAAATCTGCACATAAAAATAATTTAAAACTACATTTAACAACTCATACAGGCGAGAAAGCGTTCCAGTGTGTAATTTGTGATTACAAATCTGCACATAAGAATAATTTAAAACTACATTTAAAAACTCACATAGGCGAGAAAACGTTCCAGTGTGAAATTTGTGACTACAAATTTACAGAAAAGGAAAGTTTTAAAAGTCATTTAAAAACTCATACAGGCGAGAAAAAGTTCCGATGTGAAATTTGTAACTACAAATCTGCATATAAGCAAAGTTTAGAACGTCATTTAAAAACTCATACAGGTGAGAAAGCGTTCCAGTGTGAAATTTGTGGCTTTAAATCTGCACGAAAGGGAAGTTTAAAACTACATTTAAAAACTCATACAGGCGAGAAAGCGTTCCAGTGTGAAATTTGTGGGTATAAATTTGCACAAAAAGGAAATTTAAAAAGTCATTTAAAAACTCATACAGGCGAGAAAGCGTTCCAGTGTAAAATTTGTGGCTTTAAATCTGCACGAAAGGGAAGTTTAAAAGTACATTTAAAAACTCATAAAGGCGAGAAAGCGTTCCAGTGA
Protein Sequence
MQSSVLTSSNVLSGLKKKAAERNAKITAKVAKKTTPAKRANPTPAKRVKAKDSLVKCSVVIWRSNNHSQFKTEEIELKLEDLHHHSINIQEDTSVHRRKTKTNAIPVINEISNCNSGKKPFNCGICEYKCAQKNSLNIHLENHLKIRDYKSAKLGNLKRTGEKAFLCEICDYKCAQKGSLKSHLKTHTSEKAFQCEICDYKSAYKQSLERHLKTHTGEKAFQCKICGFKSARKGSLKLHFKTHTGEKAFQCEICGYKFTQKGNLKSHLKTHTGEKAFQCEMCGFQSAQKGSLKVHLKTHSGEKAFQCEICDYKSAHKNNLKVHLKTHTGEKAFQCEVCDYKFARKETLKLHLKTHTGEKAFQCEICDYKSAHKNNLKLHLTTHTGEKAFQCVICDYKSAHKNNLKLHLKTHIGEKTFQCEICDYKFTEKESFKSHLKTHTGEKKFRCEICNYKSAYKQSLERHLKTHTGEKAFQCEICGFKSARKGSLKLHLKTHTGEKAFQCEICGYKFAQKGNLKSHLKTHTGEKAFQCKICGFKSARKGSLKVHLKTHKGEKAFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-