Rful006686.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:12116211-12117743[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0005 0.014 16.6 1.3 1 23 66 88 66 88 0.99
2 16 2.2e-05 0.00063 20.9 1.5 1 23 94 116 94 116 0.99
3 16 1.2e-05 0.00034 21.7 2.9 1 23 122 144 122 144 0.99
4 16 8.5e-05 0.0024 19.0 0.3 1 23 150 172 150 172 0.99
5 16 6.8e-05 0.002 19.3 2.6 1 23 178 200 178 200 0.99
6 16 0.00075 0.022 16.1 1.3 1 23 206 228 206 228 0.99
7 16 1.9e-05 0.00056 21.0 0.7 1 23 234 256 234 256 0.99
8 16 0.00058 0.017 16.4 1.8 1 23 262 284 262 284 0.99
9 16 1e-05 0.00029 22.0 3.3 1 23 290 312 290 312 0.99
10 16 0.0012 0.036 15.4 4.2 1 23 318 340 318 340 0.99
11 16 6.1e-05 0.0018 19.5 2.4 1 23 346 368 346 368 0.99
12 16 2.4e-05 0.0007 20.8 2.1 1 23 374 396 374 396 0.99
13 16 6e-06 0.00017 22.7 2.9 1 23 402 424 402 424 0.99
14 16 5.6e-06 0.00016 22.8 2.0 1 23 430 452 430 452 0.99
15 16 3.1e-05 0.00089 20.4 3.4 1 23 458 480 458 480 0.99
16 16 4.8e-05 0.0014 19.8 3.6 1 23 486 508 486 508 0.99

Sequence Information

Coding Sequence
ATGGTAGCTTTGTTACAGGGTACTACTCTATCACATTCAAATCGTCTATCCAAAAGTAAGAGTGACGAAATAGAATTGAATTTGGATAAGTTACATCATCATCCCATTCATAGTCCAGAAGAGATTTCAGTTCATTTCCAGAAGACAAATACAGATTGTAACTCTCTTACTACGCCAGAAACTTCCAAGTATAAGTTTAAGTGTGAACTATGTGAATACAAATCTGCATATAAAGGAAATTTAAAACTTCATTTAAGAAGGCATTCAGGAGATAAACCGTTTCAATGTGAAATTTGTGACTATAAATCTGCACATAAGCCAAATTTAAAAATTCATTTAAGAACACATTCAGGAGATAAACCGTTTCAATGTAAAATTTGTAATTCCAAATTTGCACATAAGCCAAATTTAAAAGTTCATTTAAGAACGCATTCAGGAGAAAAACCGTTTCAATGTGAACTCTGTGACTACAAAGCTGCAAGGAAAGAAGATTTAAAAGTTCATTTACGAATGCATTCAAAAGATAAACCGTTTCAATGTGAACTCTGTGACTACAAATGTATACAAAAGGGAACTTTAAAAATTCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAATTCCAAATTTCCACAGAAGCAAAATTTAATCTTCCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAATGTGAACTCTGTGACTACAAATCTGCAAGGAAAGAAGATTTAAAAGTTCATTTACGAACGCATTCAAAAGATAAACCGTTTCAATGTGAACTCTGTGACTACAGATGTACAATAAGTGGAAGTTTAAAAATTCATTTAAGATCACATTCCGGAGATAAACCGTTTCAGTGTGAAATCTGTGACTACAAATGTACAACGAAGGGAAGTTTAAAACTTCATTTAAGAACGCATTTAGGAGATAAACCGTTTCAATGTGAACTCTGTGACTACAAATGTACAACGAAGGGAAGGTTAAAAACGCATTTAAGTACGCATTCAAGAGATAAACCGTTTCAGTGTGAAATTTGTAATTCCAAATTTGCACAGAAGCAATATTTAAAATACCATTTAAGGACGCATTCAGGAGATAAACCGTTTCAATGTGAACTCTGTGACTACAAATTTACAACGAAAGGAAGGTTAAAAATGCATTTAAATACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATCTGTGACTACAAATGTACACAAAAGGGAAGTTTAAAAATTCATTTAAGAACACATTCCGGAGATAAACCGTTTCAGTGTGAAATTTGTAATTCCAAATTTTCACAGAAGCAAAGTTTAAAAGTTCATTTACGAACGCATTTAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATCTGCACATAAGCAAAGTTTAAAAAGGCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACTGAAGCAAAATTTAAAAAAGCATTTAAGAACACATTCATGTTGA
Protein Sequence
MVALLQGTTLSHSNRLSKSKSDEIELNLDKLHHHPIHSPEEISVHFQKTNTDCNSLTTPETSKYKFKCELCEYKSAYKGNLKLHLRRHSGDKPFQCEICDYKSAHKPNLKIHLRTHSGDKPFQCKICNSKFAHKPNLKVHLRTHSGEKPFQCELCDYKAARKEDLKVHLRMHSKDKPFQCELCDYKCIQKGTLKIHLRTHSGDKPFQCEICNSKFPQKQNLIFHLRTHSGDKPFQCELCDYKSARKEDLKVHLRTHSKDKPFQCELCDYRCTISGSLKIHLRSHSGDKPFQCEICDYKCTTKGSLKLHLRTHLGDKPFQCELCDYKCTTKGRLKTHLSTHSRDKPFQCEICNSKFAQKQYLKYHLRTHSGDKPFQCELCDYKFTTKGRLKMHLNTHSGDKPFQCEICDYKCTQKGSLKIHLRTHSGDKPFQCEICNSKFSQKQSLKVHLRTHLGDKPFQCEICDYKSAHKQSLKRHLRTHSGDKPFQCEICDYKCALKQNLKKHLRTHSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01292092;
90% Identity
-
80% Identity
-