Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996557.1:27098540-27113581[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00062 0.018 16.3 2.4 1 23 412 434 412 434 0.96

2 18 0.00027 0.0078 17.4 1.3 1 20 440 459 440 462 0.94

3 18 6.5e-05 0.0019 19.4 0.8 1 23 468 490 468 490 0.98

4 18 0.0012 0.035 15.4 4.4 1 21 496 516 496 518 0.95

5 18 0.00011 0.0033 18.6 4.6 1 23 524 546 524 546 0.99

6 18 0.00011 0.0031 18.7 5.3 1 23 552 574 552 574 0.97

7 18 1.8e-05 0.00053 21.1 7.2 1 23 580 602 580 602 0.97

8 18 4.2e-07 1.2e-05 26.3 2.7 1 23 608 630 608 630 0.98

9 18 0.00031 0.009 17.3 6.7 1 23 636 658 636 658 0.97

10 18 0.00029 0.0083 17.4 4.7 1 23 664 686 664 686 0.97

11 18 2e-06 5.8e-05 24.2 2.8 1 23 692 714 692 714 0.98

12 18 0.00015 0.0042 18.3 8.1 1 23 720 742 720 742 0.98

13 18 2e-06 5.9e-05 24.1 5.5 1 23 748 770 748 770 0.98

14 18 7.3e-05 0.0021 19.2 7.7 1 23 776 798 776 798 0.98

15 18 4.7e-05 0.0014 19.8 7.1 1 23 804 826 804 826 0.97

16 18 0.0004 0.012 16.9 0.4 1 23 832 854 832 854 0.98

17 18 0.11 3.2 9.2 5.1 1 23 864 886 864 886 0.98

18 18 3e-06 8.7e-05 23.6 0.9 1 23 892 914 892 914 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00062	0.018	16.3	2.4	1	23	412	434	412	434	0.96
2	18	0.00027	0.0078	17.4	1.3	1	20	440	459	440	462	0.94
3	18	6.5e-05	0.0019	19.4	0.8	1	23	468	490	468	490	0.98
4	18	0.0012	0.035	15.4	4.4	1	21	496	516	496	518	0.95
5	18	0.00011	0.0033	18.6	4.6	1	23	524	546	524	546	0.99
6	18	0.00011	0.0031	18.7	5.3	1	23	552	574	552	574	0.97
7	18	1.8e-05	0.00053	21.1	7.2	1	23	580	602	580	602	0.97
8	18	4.2e-07	1.2e-05	26.3	2.7	1	23	608	630	608	630	0.98
9	18	0.00031	0.009	17.3	6.7	1	23	636	658	636	658	0.97
10	18	0.00029	0.0083	17.4	4.7	1	23	664	686	664	686	0.97
11	18	2e-06	5.8e-05	24.2	2.8	1	23	692	714	692	714	0.98
12	18	0.00015	0.0042	18.3	8.1	1	23	720	742	720	742	0.98
13	18	2e-06	5.9e-05	24.1	5.5	1	23	748	770	748	770	0.98
14	18	7.3e-05	0.0021	19.2	7.7	1	23	776	798	776	798	0.98
15	18	4.7e-05	0.0014	19.8	7.1	1	23	804	826	804	826	0.97
16	18	0.0004	0.012	16.9	0.4	1	23	832	854	832	854	0.98
17	18	0.11	3.2	9.2	5.1	1	23	864	886	864	886	0.98
18	18	3e-06	8.7e-05	23.6	0.9	1	23	892	914	892	914	0.96

Sequence Information

Coding Sequence: ATGAGTTCTAACGAACAGAATCATCTGAATGGTGCACCATCAAATGAAAATTCCGAAGGATTACAAAAGCCACCTGCGGTGACGATACCCACGGATTTAAGAGTCAACACTACGGCTTTAAATCCTGTAGCGTTGAGTAGTGTTGCTAAGTACTGGGTCCTCACCAATTTTCTTCCAGGACCAATACCTCAAGTTTCTGTTTATGATTTGTCAAATCCTACTCGCTCTGATAATCAGACCAAAATGGCACAGGATATGTTTGGTCAACATGGGCTCTTAGCAGATCAACTACTTTTACCTCAGCATGCCCAAATACCTGTTAGTATATCCACTACTCAAGCTCTCACTAACTTGGCGATTCCAGCAAGTGCAATGCATCTGGAAAACCCTTCTAATCACAATCAAACATCATCAAATCATCAGCAATCTGAAGGACAAACTATTGTCTCTCAAGCCCAATCACAGCTCTCTCATTCTCAACTACATAGTACACAACACAATCAGCAACAACAACAGCAGCAGCAAAATATCATTCAAGTTCAAGACAATCTAGTTTCAGTAATTGAAGACAGTAAAGACCATAAAGATTTAATAGCGTCACAAATAGCACAAGCTCAAATCCATTTAGCTGAAACTCAACAACAGTTAAATCAGCAAACTTTAACTGTACAGCAACTACAACAGTTACAGGTCCAACAAGTTCTAGACAACGTAGTTCGAATGGAAAGTGCGGAAAACGAGCAAAGTCAAAGAAATTCGGATCACGATTCCTTAACAAACTCGGACGGTTTGCAAATAGTGAAAGACGAAAAGAATCTACAAAATTGTTCCAAGTTGCTCAGCGGTACACAATTTGGTTTACAAGACATTAAAACCAATTTGATGGATGTACGCACGCCAGATGGTAGTATTGTTAAAATTTCAGCTGGATTACAAGAACAAGACTTGGCTAAGACTTTAGGAATAGAAATGGTCCAAAACATGTACAAAGTTAACGTGGAAGAGATAAATCAATTATTAGCATATCACGAGGTTTTTGGTAAAATACAAGGCGAACTTGCAACAGGTCAAAGTAATGTAACTACTAACAACAGTAACGTTAATATACAGCAAAGTGCTACTGCAATCGCTAACAATATTCACATTGTTACGCCTAAAACTTTGGTGGAAAATGATCAGGAAACTGCGAGTTCTACCACGGCAGATGGTGTGGTAACCATCGCGACTGGAAATCATATTTGTGATTTGTGTGGGAAAATGTTTCAGTTTCGTTATCAGTTAATTGTGCACAGACGTTATCACATTGAAAGGAAACCGTTTACCTGTCAAGTTTGTGGTAAGGCGTTTATTAACGCACAAGAATTGACTAGACATGGTAAATGTCACTTAGGAGGTAGCATGTTTACTTGTGCCGTGTGCTTCCATGTTTTTGCAAATGCAGCTTCTTTGGAACGCCATATGAAACGTCACTCGACGGATAAACCATACAATTGTACTACTTGTGGAAAGGCTTTTGCCAGGAAGGAACATTTAGATAACCATACCAGGTGCCATACGGGAGAAACTCCTTACAGATGCCAATATTGTGCAAAAACTTTTACTAGGAAAGAACACATGGTAAATCATGTTCGTAAACATACAGGTGAAACCCCTCATCGGTGTGAAATATGTAAAAAGTCGTTTACAAGAAAAGAGCATTTTATGAACCATGTTATGTGGCATACAGGAGAAACCCCACATCATTGTACAATTTGCGGAAAGAAATATACAAGGAAAGAACATTTGGCTAACCACATGCGATCACACACAAATGACACGCCTTTTAGATGCGAAATTTGTGGTAAATCATTTACTAGGAAAGAACATTTTACAAACCACATCATGTGGCATACAGGTGAAACGCCCCACAGATGTGATTTTTGTTCAAAAACGTTTACAAGAAAGGAACATTTACTGAACCACGTTCGTCAACACACGGGCGAATCGCCGCATCGATGCGTTTATTGTGCCAAGTCGTTTACTCGTAAAGAGCATCTTGTTAATCATGTCAGGCAACATACAGGAGAAACGCCCTTCCGTTGCAGTTATTGTCCAAAAGCGTTCACAAGGAAAGATCATCTGGTAAATCATGTAAGACAACATACGGGAGAATCGCCCCATAAATGTACGTTTTGCACGAAATCCTTTACAAGGAAGGAACATTTAACGAATCATGTGAGGCAGCATACAGGCGAATCGCCACACAGATGTCCTTATTGCTCAAAATCCTTCACAAGGAAAGAACACTTAACCAATCACGTTCGCATTCATACAGGAGAATCACCGCATCGGTGCGAATTTTGTCAGAAAACTTTCACTAGGAAGGAGCACTTGACAAATCATTTGCGTCAGCATACTGGTGAAACACCACACTGTTGTAATGTGTGCTCTAAACCGTTCACCAGGAAAGAACACTTGATCAATCACATGCGCTCGCATACCGGAGAGCGTCCATTTTCATGTGGAGAATGTGGAAAATCGTTTCCACTTAAAGGTAATTTATTATTTCATCAGAGATCTCACAATAAAGGCGCGGAAGCGGACAGACCATTTAGGTGCGATCTTTGCGACAAAGATTTCATGTGTAAGGGACATCTGGTGTCGCATCGAAGATCACACAGTGGGGAACGACCTCATGCTTGTCCAGATTGTGGTAAAACGTTTGTAGAAAAAGGTAACATGTTAAGACATTTAAGAAAGCATGCACTTGAAAATGGATCTCAAACTAATGCGGCGAACCAAATAACACAAGTCACCACTAACCAAGTTAATCAAACACAACCCAGTGCTGTACCGGTGCAAACTTCGGTGGCATCTACGATTCAAATACCGCAAGTTAGTCAAACGTTAACGAATTCTACGCCCGCCAGTAATATAATAAGTAGTGGAAATATCGTACAACAAACTCATTTACCCATTCATCAACAAAATAATCATTCGGTTGTTGTTCCTACTGCAAATAGTAATAATATTCTGGCTTCGTATTCATAA
Protein Sequence: MSSNEQNHLNGAPSNENSEGLQKPPAVTIPTDLRVNTTALNPVALSSVAKYWVLTNFLPGPIPQVSVYDLSNPTRSDNQTKMAQDMFGQHGLLADQLLLPQHAQIPVSISTTQALTNLAIPASAMHLENPSNHNQTSSNHQQSEGQTIVSQAQSQLSHSQLHSTQHNQQQQQQQQNIIQVQDNLVSVIEDSKDHKDLIASQIAQAQIHLAETQQQLNQQTLTVQQLQQLQVQQVLDNVVRMESAENEQSQRNSDHDSLTNSDGLQIVKDEKNLQNCSKLLSGTQFGLQDIKTNLMDVRTPDGSIVKISAGLQEQDLAKTLGIEMVQNMYKVNVEEINQLLAYHEVFGKIQGELATGQSNVTTNNSNVNIQQSATAIANNIHIVTPKTLVENDQETASSTTADGVVTIATGNHICDLCGKMFQFRYQLIVHRRYHIERKPFTCQVCGKAFINAQELTRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYNCTTCGKAFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCVYCAKSFTRKEHLVNHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHVRQHTGESPHRCPYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFSCGECGKSFPLKGNLLFHQRSHNKGAEADRPFRCDLCDKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHALENGSQTNAANQITQVTTNQVNQTQPSAVPVQTSVASTIQIPQVSQTLTNSTPASNIISSGNIVQQTHLPIHQQNNHSVVVPTANSNNILASYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00951115;
90% Identity: iTF_01294073;
80% Identity: -