Rful005359.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:13787934-13796964[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00084 0.024 15.9 5.3 1 23 126 148 126 148 0.99
2 20 0.0002 0.0057 17.9 1.9 1 23 154 176 154 176 0.99
3 20 0.00027 0.0077 17.5 4.7 1 23 182 204 182 204 0.99
4 20 5e-05 0.0015 19.7 3.3 1 23 210 232 210 232 0.99
5 20 0.00027 0.0078 17.4 3.1 1 23 238 260 238 260 0.99
6 20 0.00021 0.006 17.8 2.9 1 23 266 288 266 288 0.99
7 20 0.0005 0.014 16.6 1.7 1 23 294 316 294 316 0.99
8 20 0.00018 0.0053 18.0 1.1 1 23 322 344 322 344 0.99
9 20 4.3e-05 0.0012 20.0 1.4 1 23 350 372 350 372 0.99
10 20 6.3e-06 0.00018 22.6 3.6 1 23 378 400 378 400 0.99
11 20 0.00057 0.016 16.4 2.7 1 23 406 428 406 428 0.99
12 20 0.00022 0.0062 17.8 3.2 1 23 434 456 434 456 0.99
13 20 2.7e-05 0.00079 20.6 1.9 1 23 462 484 462 484 0.99
14 20 6.8e-05 0.002 19.3 1.4 1 23 490 512 490 512 0.99
15 20 9.8e-05 0.0028 18.8 2.4 1 23 518 540 518 540 0.99
16 20 0.00099 0.029 15.7 4.6 1 23 546 568 546 568 0.99
17 20 0.00025 0.0074 17.5 8.6 1 23 574 596 574 596 0.99
18 20 0.00036 0.01 17.1 2.3 1 23 602 624 602 624 0.99
19 20 2.8e-05 0.0008 20.6 3.6 1 23 630 652 630 652 0.99
20 20 0.023 0.67 11.4 1.7 1 23 658 680 658 680 0.98

Sequence Information

Coding Sequence
ATGGCTAAGTTGAAATCCTTGATCAAGTTAGAGAAATCAGAAGAAGTTATCGATGGTTTGCGAGCCCCCAGTGATGATCAAGAAATTACAACAGACGACATGGAGGCCATGGATGCCAAATTAGAAGATTTGCACCACTCCATCGATATTAAAGAAGAAGACGATGATAATTTAGAATATCAAGAGGATAGCAATGAGGGAACTACTCTATCACATTCAAATCTACACTCCAAAATTAAGAGTGACGAAATAGAATTGAATTTGGATAAGTTACATCATCATCCCATTCATAGTCGAGAAGAGATTTCAGTTCATTTTCAGAAGACAAAAACAGATTGTAATCCGCTCACTACGCCTCAAATTTCCAACTATAAGTTTAAGTGTGAACTATGTGACTATAAATGTGCACGGAAGCTACATTTAGAAAGTCATTTAAGAACCCATTCAGGAGATAAACCGTTTCAGTGTAAAATTTGTAACCACAAATCTGCCAGTAAAGGAGGTTTAAAAGTTCATTTAAGAACGCATTCGGGAGATAAACCGTTTCAGTGTGGAATTTGTGACTATAAATGTGCACATAGGAATAGTTTAACAAATCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGGCATTTGTGACTACAAGTGTACACAAAAGGGAAGTTTAACATATCATTTAAGAACGCATTCAGGAGAAAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCAAAGAAGGAATTTTTAAAAATTCATTTGAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACAGATGCAAAATTTAAAAAGTCATTTGAAAACGCATTCAGGAGATAAACCGTTTCAGTGTGATATTTGTGACTACAAATGTACATGGAAGGGAAGTTTAACAATTCATATAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAACCATAAATCTGCCAGTAAAGGAGGTTTAAAAGTTCATTTAAGAACGCATTCGGGAGATAAACCGTTTCAGTGTGGAGTTTGTGACTATAAATGTGCACAGAAGGGTTCTTTAGAAAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTACAAATGTACACGGAAGGGAAGTTTAACAAATCATTTAAGAACTCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGCCTACAAATCTGCTCAGAAGCATCAGTTAAAAAGTCATTTAAGAACGCATTCAAGAGTTAAACCGTTTCAGTGTGAAATTTGTGACTATACATGTGCACATAGGAATAGTTTAAAAATTCATTTAATAACGCATTTAGGAGATAAACCGTTTCAGTGTGGAATTTGTGACTATAAATGTGCACAGAAGAGTAATTTAGGAAGTCATTTAAGAACGCATTCAGGCGATAAACCGTTTCAGTGTGGAGTTTGTGACTATAAATGTGCACGGAAGGGTTCCTTAGAAATTCATTTAAGAAAGCATTCAGGAGATAAACCGTTTCAGTGTGAACTTTGTAATTATAAATGTGCACAGAAGGGTTCTTTAGAAAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAATGTGAACTTTGTAACTATAAATGTGCACGAAAGGGTTACTTAAAAAGTCATTTAAAAAAGCATTCAGGAGATAAACCGTTTCGGTGTGAAATTTGTGACTATAAATGTGCACGGAAGCATCATTTAAAAAGTCATTTAAGAACGCATTTAGGAGATAAACCGTTTCAATGTGAACTTTGTGACTACAAATCTGCAACTAAAGGATGTTTAAAAGTTCATTTAAGAACGCATTCGGGCGACAAACCGTTTCAGTGTACAATTTGTGAATACAAATTTGCACAGAAGATTCATTTAAAAAGTCATTTAAAAACGCATTCAAGAGTTAAACCGTTTCAGTGTGCCATTTGTAATTTCAGATCTGCTCATAAGAGGAGTTTAAAGGGTCATGTTAAAATACATACCATCTCAAATTAG
Protein Sequence
MAKLKSLIKLEKSEEVIDGLRAPSDDQEITTDDMEAMDAKLEDLHHSIDIKEEDDDNLEYQEDSNEGTTLSHSNLHSKIKSDEIELNLDKLHHHPIHSREEISVHFQKTKTDCNPLTTPQISNYKFKCELCDYKCARKLHLESHLRTHSGDKPFQCKICNHKSASKGGLKVHLRTHSGDKPFQCGICDYKCAHRNSLTNHLRTHSGDKPFQCGICDYKCTQKGSLTYHLRTHSGEKPFQCEICDYKCAKKEFLKIHLRTHSGDKPFQCEICDYKCAQMQNLKSHLKTHSGDKPFQCDICDYKCTWKGSLTIHIRTHSGDKPFQCEICNHKSASKGGLKVHLRTHSGDKPFQCGVCDYKCAQKGSLESHLRTHSGDKPFQCEICDYKCTRKGSLTNHLRTHSGDKPFQCEICAYKSAQKHQLKSHLRTHSRVKPFQCEICDYTCAHRNSLKIHLITHLGDKPFQCGICDYKCAQKSNLGSHLRTHSGDKPFQCGVCDYKCARKGSLEIHLRKHSGDKPFQCELCNYKCAQKGSLESHLRTHSGDKPFQCELCNYKCARKGYLKSHLKKHSGDKPFRCEICDYKCARKHHLKSHLRTHLGDKPFQCELCDYKSATKGCLKVHLRTHSGDKPFQCTICEYKFAQKIHLKSHLKTHSRVKPFQCAICNFRSAHKRSLKGHVKIHTISN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-