Rful009985.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:15134168-15136165[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0028 0.082 14.2 0.7 1 23 62 84 62 84 0.97 2 22 0.0044 0.13 13.6 2.1 1 23 90 112 90 112 0.97 3 22 0.00032 0.0092 17.2 1.4 1 23 118 140 118 140 0.97 4 22 0.0013 0.037 15.3 0.6 1 23 146 168 146 168 0.98 5 22 0.00012 0.0035 18.5 1.9 1 23 174 196 174 196 0.98 6 22 0.00015 0.0045 18.2 1.0 1 23 202 224 202 224 0.98 7 22 0.00012 0.0035 18.5 1.9 1 23 230 252 230 252 0.98 8 22 0.0002 0.0059 17.8 1.8 1 23 258 280 258 280 0.97 9 22 3.5e-05 0.001 20.3 2.5 1 23 286 308 286 308 0.98 10 22 0.00098 0.028 15.7 0.7 1 23 314 336 314 336 0.97 11 22 0.011 0.32 12.4 1.1 1 23 342 364 342 364 0.97 12 22 2.3e-05 0.00067 20.8 3.9 1 23 370 392 370 392 0.98 13 22 0.45 13 7.3 0.3 8 23 405 420 400 420 0.92 14 22 0.00032 0.0092 17.2 1.4 1 23 426 448 426 448 0.97 15 22 8.8e-05 0.0025 19.0 2.1 1 23 454 476 454 476 0.99 16 22 0.00012 0.0035 18.5 1.9 1 23 482 504 482 504 0.98 17 22 0.0002 0.0059 17.8 1.8 1 23 510 532 510 532 0.97 18 22 2e-05 0.00057 21.0 1.7 1 23 538 560 538 560 0.98 19 22 0.00022 0.0065 17.7 0.3 1 23 566 588 566 588 0.97 20 22 0.011 0.32 12.4 1.1 1 23 594 616 594 616 0.97 21 22 2.3e-05 0.00067 20.8 3.9 1 23 622 644 622 644 0.98 22 22 0.97 28 6.3 1.3 1 16 650 665 650 665 0.94
Sequence Information
- Coding Sequence
- ATGGAACGAATCGACCAAGTATCGGAACCTCTCGATAATTCTAGTAGCCATGAAATTGAAGTAGAAGATGTGAAGTTTAATTTAGAAGACTTACATCACTCGATAGACATCAAAGACGAGAGCGAGAGCGATGCTGAACAACTACCACGGGAGAAACCCGTAAGAAAACCTAAAAATTCAAATTTTATTTGTAAGTTTTGTGATTATAAATATGCATGGAAATCAGAATTAATAAGACATTTAAAAATTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTAACTATAAATGTGCACAAAGGGTACGTTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTCAGATTTGTGACTATAAATGTGCACAAAGAGCATCTTTAAAAGGCCATTTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACTGAGAGCATCTTTAAAAGGACATATAAGAACGCATACAGGCGAGAAACCTTTTGCTTGTGAGATTTGCGACTATAAATGTGCACAAAGAACATCTTTAAGAGACCATTTAAGAACGCACACAGGCGAGAAATCTTTTGCTTGTGAGATTTGTGAATATAAATGTGCACAAAGAGCATCTTTAAAAGTACATTTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGCGACTATAAATGTGCACAAAGAACATCTTTAAGAGACCATTTAAGAACGCACACAGGCGAGAAATCTTTTGCTTGTGAGATTTGTAACTATAAATGTGCACAAAGAGCATCTTTAAAAAAACATTTAAAAATTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAGATGTACACAAAGGAAAGATTTAAAAATACATCTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGAGTTTTGTGACTATAAAAGTGCACGAAGAGCATCTTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGTGATTTGTGACTATAAATGTGCACAAAAAAGAGTTTTAAAAGAACATTTAAAAATTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAGATGTACACAAAGAAAAAATTTAAAAACACATTTAAGGACGCACACAGGCGAGAAACCTTTTGCTTGTCAGATTTCTGATTATAAATGTGCTCATAAATCATCTTTAAAAGCACATTTAAAAATTCACACAGGCGAGAAACCTTTTGCTTGTCAGATTTGTGACTATAAATGTGCACAAAGAGCATCTTTAAAAGGCCATTTAAGAACGCACACAGGCGAGAAACCTTTTACTTGTGAGATTTGTGAATATAAATGTGCACAAAGAGAATCTTTAAAAGTACATTTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGCGACTATAAATGTGCACAAAGAACATCTTTAAGAGACCATTTAAGAACGCACACAGGCGTGAAACCTTTTGCTTGTGAGATTTGTAACTATAAATGTGCACAAAGAGCATCTTTAAAAAAACATTTAAAAATTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAGATGTACACAAAGGGAAGATTTAAAAATACATCTAAGAACGCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAAAGTGCACGAAGAGCATCTTTAAAAGAACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGTGTGATTTGTGACTATAAATGTGCACAAAAAAGAGTTTTAAAAGAACATTTAAAAATTCACACAGGCGAGAAACCTTTTGCTTGTGAGATTTGTGATTATAGATGTACACAAAGAAAAAATTTAAAAACACATTTAAGGACGCACACAGGCGAGAAACCTTTTGCTTGTCAGATTTGTGATTATAAATGTGCTCATAAATCATCTTTATAA
- Protein Sequence
- MERIDQVSEPLDNSSSHEIEVEDVKFNLEDLHHSIDIKDESESDAEQLPREKPVRKPKNSNFICKFCDYKYAWKSELIRHLKIHTGEKPFACEICNYKCAQRVRLKEHLKTHTGEKPFACQICDYKCAQRASLKGHLRTHTGEKPFACEICDYKCALRASLKGHIRTHTGEKPFACEICDYKCAQRTSLRDHLRTHTGEKSFACEICEYKCAQRASLKVHLRTHTGEKPFACEICDYKCAQRTSLRDHLRTHTGEKSFACEICNYKCAQRASLKKHLKIHTGEKPFACEICDYRCTQRKDLKIHLRTHTGEKPFACEFCDYKSARRASLKEHLKTHTGEKPFACVICDYKCAQKRVLKEHLKIHTGEKPFACEICDYRCTQRKNLKTHLRTHTGEKPFACQISDYKCAHKSSLKAHLKIHTGEKPFACQICDYKCAQRASLKGHLRTHTGEKPFTCEICEYKCAQRESLKVHLRTHTGEKPFACEICDYKCAQRTSLRDHLRTHTGVKPFACEICNYKCAQRASLKKHLKIHTGEKPFACEICDYRCTQREDLKIHLRTHTGEKPFACEICDYKSARRASLKEHLKTHTGEKPFACVICDYKCAQKRVLKEHLKIHTGEKPFACEICDYRCTQRKNLKTHLRTHTGEKPFACQICDYKCAHKSSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -