Rful008412.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:3358152-3360648[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00016 0.0046 18.2 2.6 1 23 48 70 48 70 0.98
2 21 5.5e-05 0.0016 19.6 0.7 1 23 76 98 76 98 0.98
3 21 0.0052 0.15 13.4 5.2 2 23 105 126 104 126 0.97
4 21 0.00034 0.0099 17.1 1.2 1 23 132 154 132 154 0.97
5 21 3.7e-06 0.00011 23.3 1.2 1 23 160 182 160 182 0.99
6 21 0.0033 0.096 14.0 2.6 1 23 188 212 188 212 0.93
7 21 0.0025 0.073 14.4 1.7 3 23 220 240 218 240 0.98
8 21 1.6e-05 0.00046 21.3 1.3 1 23 260 282 260 282 0.99
9 21 0.0002 0.0058 17.9 3.7 1 23 288 310 288 310 0.98
10 21 0.0003 0.0087 17.3 2.7 1 23 316 339 316 339 0.96
11 21 0.0023 0.067 14.5 1.4 1 23 345 367 345 367 0.97
12 21 2.3e-06 6.7e-05 24.0 2.0 1 23 373 395 373 395 0.99
13 21 8.8e-06 0.00025 22.1 1.8 1 23 401 423 401 423 0.99
14 21 0.00064 0.019 16.3 1.5 1 23 429 451 429 451 0.96
15 21 0.00039 0.011 17.0 2.6 1 23 457 479 457 479 0.98
16 21 0.00028 0.0081 17.4 0.7 1 23 485 507 485 507 0.99
17 21 0.00022 0.0062 17.8 4.1 1 23 513 535 513 535 0.98
18 21 0.0009 0.026 15.8 4.2 1 23 541 563 541 563 0.98
19 21 0.00071 0.02 16.1 3.4 1 23 569 591 569 591 0.98
20 21 0.0014 0.04 15.2 1.1 1 23 597 619 597 619 0.99
21 21 0.00017 0.005 18.1 1.4 1 23 625 647 625 647 0.99

Sequence Information

Coding Sequence
ATGTCTAGCCAAAAAATAGAAATTCCGGGCTGTTCGTCTCAAATTAAGACGGAAGAAGAAATAGAGTTCAAATTGGAAGATCTGCATCATTCAATTGACATTAAAGAAGAGATTCCAATTTTAGAAGAAAGAAAAACAAATTTTTGTTGTGAAATTTGTGACTATAAATCTGCAGATAGGGGAAATTTTAATAGACATTTAAGAACACATACAGGCGAGAAACCGTTTATGTGTGAATTTTGTGATTATGGCAGTTCGGATAGCGGATCATTAAAGAGGCACTTAAGAACCCACACTGGCGAGAAGCCATTAAAGTGTAAGTTCTGCGATTATAAATGTGCTCATTCTGACAGCCTAAGAAATCACATAAGTAGTCATACCGGCGAGAAGCCGTTTATATGTGATATTTGTGGTTATAAATGTCTACGAAAAGGAAATTTAATTAAACACTTAAGAATCCATACTGGCGAGAAACCATTTACCTGTGACGTTTGCACTAAAAAGTTTGCAGAAAATGGGCAGCTTAGAAAACATTTAAGAACTCATACAGGTGAGAAACCATACCAATGTGACTTTTGCGAGTATAATTGTGCCGAAAAAGGAAATTTAAACCGTCACTTACGAAGTCGTACTCATACAGGCGAGAAGCCATTTGGGTGTGACTTGTGCGACTATAAATGTAGACAAAAGGGAGGTTTAATTTCTCATTTAAAAACTCACTCTGGTAAAAAACCGCATCTTCGGGGACACTTGAAAACGCATACCGGCGAGAAACCATTCAAGTGCGAATTTTGTGACTATAACACTGCAAACAAAGGAAATCTAAACCGACACGTAAGAACTCATACGGGAGAAAAGCCATTTATTTGTGAAGTTTGCAACTACAGTTGCTCAGATAAAGGATGTTTAAACAAACATTTAAGAATCCATACCGGCGAAAAACCGTTTAAGTGTAAAATTTGCGATTATAGGTCGGCACGTCAGGACAGTTTAAAACATCATTATTTGATTAGTCATACCGGCGAGAAGCCGTTTATCTGTGATATTTGTGATTATAAATGTCTACGAAAAGGAAGTTTAATTAAACACTTAAGAATCCATACCGGCGAGAAACCATTTACTTGTGACGTTTGCACTAAAAAGTTTACGGAAAATGGGCAGCTGAGAAAACATTTAAGAACTCATACAGGTGAGAAACCATACCAATGTGACATTTGCGAGTATAATTGTGCCGATAAAGGAAATTTAAAGCGTCACTTACGAAGTCATACGGGCGAAAAACCATTTTTATGTGAAGTTTGTGACTATAGTTGCGCAGAAAAAAGAGATTTAATCAAGCATCTCAGGAGACATTCTGGCGAGAAGCCGTTTTCGTGTGATATTTGTGAGTATAGATGTTCCGATAGAAAGAGTCTAAAAGTACACATAACTACTCATACAGGCGAGAAGCCATTCAAGTGCGGATTTTGTGACTATAACACTGCAGAAAGAGGAAATCTAAACAGACACGTAAGAACTCATACGGGAGAAAAGCCGTTTATTTGTGAAGTTTGTAACTACAGTTGCAAAGATAAAGGATGTTTAAACAGACATTTAAGAATCCATACCGGCGAAAAACCGTTTAAGTGTAAAATTTGCGATTATAGGTCGGCACATCAGGAAAGTTTAAAACATCATTTGATTAGTCATACAGGCGTGAAGCCGTTTACATGTGATATTTGTGAGTATAGATGTTCCTATAGAAAGAGTCTAAAAGTACACATCAGTACTCATACAGGCGAGAAGCCATTCAAGTGCGGATTTTGTGACTATAACACTGCAGAAAAAGGAAAATTAAACCGTCACTTACGAAGTCATACAGACAGGACATCGTTTAAGTGTGCCATTTGTGACTATACCAGTTTAACTAAAGAAAATTTAAAGCGCCACTTAAGAACTCATAGCGGCGATTTGAAAAATTGA
Protein Sequence
MSSQKIEIPGCSSQIKTEEEIEFKLEDLHHSIDIKEEIPILEERKTNFCCEICDYKSADRGNFNRHLRTHTGEKPFMCEFCDYGSSDSGSLKRHLRTHTGEKPLKCKFCDYKCAHSDSLRNHISSHTGEKPFICDICGYKCLRKGNLIKHLRIHTGEKPFTCDVCTKKFAENGQLRKHLRTHTGEKPYQCDFCEYNCAEKGNLNRHLRSRTHTGEKPFGCDLCDYKCRQKGGLISHLKTHSGKKPHLRGHLKTHTGEKPFKCEFCDYNTANKGNLNRHVRTHTGEKPFICEVCNYSCSDKGCLNKHLRIHTGEKPFKCKICDYRSARQDSLKHHYLISHTGEKPFICDICDYKCLRKGSLIKHLRIHTGEKPFTCDVCTKKFTENGQLRKHLRTHTGEKPYQCDICEYNCADKGNLKRHLRSHTGEKPFLCEVCDYSCAEKRDLIKHLRRHSGEKPFSCDICEYRCSDRKSLKVHITTHTGEKPFKCGFCDYNTAERGNLNRHVRTHTGEKPFICEVCNYSCKDKGCLNRHLRIHTGEKPFKCKICDYRSAHQESLKHHLISHTGVKPFTCDICEYRCSYRKSLKVHISTHTGEKPFKCGFCDYNTAEKGKLNRHLRSHTDRTSFKCAICDYTSLTKENLKRHLRTHSGDLKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-