Rful008362.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:2943477-2953267[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.031 0.89 11.0 1.4 1 23 97 119 97 119 0.97
2 24 0.00056 0.016 16.5 3.3 1 23 125 147 125 147 0.99
3 24 8.7e-05 0.0025 19.0 4.5 1 23 153 175 153 175 0.98
4 24 0.00043 0.012 16.8 2.6 1 23 181 203 181 203 0.98
5 24 0.0018 0.052 14.9 4.3 1 23 209 231 209 231 0.98
6 24 0.1 3 9.3 6.7 1 23 237 259 237 259 0.98
7 24 0.00047 0.014 16.7 2.4 1 23 265 287 265 287 0.96
8 24 0.00083 0.024 15.9 4.3 1 23 293 315 293 315 0.98
9 24 8.1 2.3e+02 3.4 0.1 1 17 321 337 321 338 0.89
10 24 0.0046 0.13 13.6 2.8 1 23 396 418 396 418 0.99
11 24 0.00066 0.019 16.2 1.8 1 23 424 446 424 446 0.97
12 24 2.4e-05 0.00068 20.8 2.4 1 23 452 474 452 474 0.99
13 24 0.00046 0.013 16.7 1.1 1 23 480 502 480 502 0.98
14 24 0.00056 0.016 16.5 0.8 1 23 508 530 508 530 0.98
15 24 2.8e-05 0.0008 20.6 2.0 1 23 536 558 536 558 0.99
16 24 0.0024 0.07 14.4 2.9 1 23 564 586 564 586 0.98
17 24 0.00051 0.015 16.6 0.2 1 23 592 614 592 614 0.97
18 24 0.0092 0.26 12.6 3.1 1 23 620 642 620 642 0.99
19 24 7.2e-07 2.1e-05 25.6 2.2 1 23 648 670 648 670 0.98
20 24 4.2e-05 0.0012 20.0 4.0 1 23 676 698 676 698 0.98
21 24 0.00048 0.014 16.7 1.9 1 23 704 726 704 726 0.98
22 24 0.0014 0.041 15.2 2.5 2 23 733 754 732 754 0.97
23 24 0.0033 0.097 14.0 3.1 1 23 760 782 760 782 0.98
24 24 1.5e-05 0.00042 21.4 4.4 1 23 788 810 788 810 0.98

Sequence Information

Coding Sequence
ATGATCAGCATTTGTCGAGGAGACGTTGATTCAAAAAATGAGGGTGAAAATTCTTTTGGGACTGGCGCAAACGTCTCCAATCGAACTAAACGAAATAGTGAAATCATCCGTTTGTTACAGGAAGCTCCACGTGATTCAAAAATCTTCCCCGAAGTTAAAACGGAAGAAGAGGAAGAAATAAAATTCAAATTGGACGATTTGCATCATTCAATTGATATTAAAGGAGAGACTTTGATAGTTGATTGTGGACAGGATCAGGATTGTAAAGCAGAAACAAGGAAAAAACTCTTTTTTTGTGCAATCTGTGGTTACAAATGTAAACAAAGGGGAGTTTTTGAAAGTCATGCAAGGATCCATACTGGCGAGAAACCATTTCAATGTGATTTTTGCGACTACAAAAGTGTACAGAAAGGACACCTAAATAGTCATTTAAAAACTCATACTAGGGAGAAGCCTTTTAAGTGTGAAATATGTGGATATACATGTGCACATAGATACAGTTTAAAAAGGCATTTGGGAACGCATACGAGGACAAAACCATTTTCTTGTGGGATTTGTGATTTTAAATGTGCTACTAGGGGGTACTTAAAAAGCCACTTAAGAACGCATACGGATGTAAAACCGTTTGCGTGTGAAATATGCGACTATAAATGTAAAGAACACGAAAGTTTGAAACAGCATTTAAGAACTCATACAGGCGAGAAACCATTTAAATGCGACATTTGTTACTATACATGTGCTCATAAACAAAGCATGAGCAGACATTTAAAAAATCATTTAGGCGATAAACGTTACGCGTGTAAAATCTGCGGTTTTAAATGTGCAACTAGTTCAAATTTAAAGAGTCATTTTGTAACGCATTCCGGCGAAAAACCATTTAAATGTGAACTTTGCGATTATAAGTGTGCACGCAAGGAAGAATTAACAAGGCATTTTAAAAGTCATACCGGCGAAAAACAATTTGCTTGTGACTTTTGTGAATACAAATTTGCTGCTAGCGGACAATTAAAAATCACGCTTTTGTTACAGGAAAGTCCAAATCAATCAAACGGCTGCTTTCAAATTAAGACGGAAGAAGTAGAAATCAAAGTTGAAGAATTGCATCATTCGATAGACATTAAAGAAGAGCCTACAGTGGTAGAATCTGAACTGTACAGAGAATGCGTAACAGAAACAGGAAAAATGTTTACATGTGAAATTTGCGGTTACAAATGTAAAAAAAATGGAATCCTAAAAATGCACTTAAGAACGCACACTGGCGAGAAACCATTTGCGTGCGAACTTTGTAATTATAAAAGTGCCCAAAAAGGGCATTTAAGACTCCACTTAAGAACACATTCTGGCGAAAAGCCGTTTACTTGTGAAATTTGTGGCTATAAGTGTGTACAAAAAGGCTATTTAAAGGATCACTTAAGAACCCATAGCGGCGAAAAACCATTTGAGTGTGACATTTGTGACTATAAATGTGCAAGAAAAGAAGTGCTAAAAATTCATGCAAGAACTCACACTGGTGAGAAACCGTTCATGTGTGATATTTGCGACTACAAATGTGCGGTTAAAGGAAGTTTAACAATGCATTTAAGGGTTCATACCGGCGAGAAACCATTTACGTGTGATATTTGTGACTATAAGTGCGTACAAAAAGGGAATTTGACGTTACATTTGCGAATGCATACTGGCGAAAAACTTTTTTCTTGCAACATCTGTGACTATAAATGTGCCCAAAGATTGAATTACGAAATTCATACAAGAACCCATTCTGGCGAAAAACCGTTTGCATGTGAAATTTGCGCTTTTAAATTTGTAGATGCGAGTTACTTAAAAAGTCACTTAAAAATCCATACAGGCGAAAAACCGTATAAGTGTGCATTTTGTGAATTTAAATGTGCCCGTAGAAGAGGTTTAAATATTCATTTAAGAACCCATACTGGTGAAAAACCATTTCCATGTGAAATGTGCGACCGTAAATTTGCACGAAAAGATCATTTAAAAATTCACTTAAGAACTCATACTGGTGAGAAACCTTACAACTGTGAAATATGCGGTTATACAACCGTGCACAAGCACAGTTTAAAACGGCATTTGAGGATTCATACAGGCGAAAAACCGTTTATGTGTGAAATATGCGACTTTAAATGTGCAGATAACAGAAATTTAAGTATGCATATAAAAACTCATACTGGTGAGAAACCGGTGATGTGTAAAATATGTGATTATAAATGTATTCGTAAGAGAGATTTAGAAGAACATTTCAGAACTCATACGGGGGAGAAACCATTTACTTGCAACATTTGCGATTATAAATGTGCGCGTAAGCGAGTACTAAATCTTCATTTAAAAAGTCACACAGGCGAGAAACCTTTTTCGTGCGAAATTTGTGGTTACAAATGTAAACAAAACTCAAATTTAAAACAACATTTAAAAAGACACACTGAGAAGAATTGA
Protein Sequence
MISICRGDVDSKNEGENSFGTGANVSNRTKRNSEIIRLLQEAPRDSKIFPEVKTEEEEEIKFKLDDLHHSIDIKGETLIVDCGQDQDCKAETRKKLFFCAICGYKCKQRGVFESHARIHTGEKPFQCDFCDYKSVQKGHLNSHLKTHTREKPFKCEICGYTCAHRYSLKRHLGTHTRTKPFSCGICDFKCATRGYLKSHLRTHTDVKPFACEICDYKCKEHESLKQHLRTHTGEKPFKCDICYYTCAHKQSMSRHLKNHLGDKRYACKICGFKCATSSNLKSHFVTHSGEKPFKCELCDYKCARKEELTRHFKSHTGEKQFACDFCEYKFAASGQLKITLLLQESPNQSNGCFQIKTEEVEIKVEELHHSIDIKEEPTVVESELYRECVTETGKMFTCEICGYKCKKNGILKMHLRTHTGEKPFACELCNYKSAQKGHLRLHLRTHSGEKPFTCEICGYKCVQKGYLKDHLRTHSGEKPFECDICDYKCARKEVLKIHARTHTGEKPFMCDICDYKCAVKGSLTMHLRVHTGEKPFTCDICDYKCVQKGNLTLHLRMHTGEKLFSCNICDYKCAQRLNYEIHTRTHSGEKPFACEICAFKFVDASYLKSHLKIHTGEKPYKCAFCEFKCARRRGLNIHLRTHTGEKPFPCEMCDRKFARKDHLKIHLRTHTGEKPYNCEICGYTTVHKHSLKRHLRIHTGEKPFMCEICDFKCADNRNLSMHIKTHTGEKPVMCKICDYKCIRKRDLEEHFRTHTGEKPFTCNICDYKCARKRVLNLHLKSHTGEKPFSCEICGYKCKQNSNLKQHLKRHTEKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-