Rful008225.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:13390298-13392259[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.022 0.62 11.5 7.8 1 23 63 85 63 85 0.99
2 21 2.7e-05 0.00078 20.6 5.2 1 23 91 113 91 113 0.99
3 21 7.7e-06 0.00022 22.3 3.3 1 23 119 141 119 141 0.99
4 21 0.00024 0.0071 17.6 0.4 1 23 147 169 147 169 0.99
5 21 5.8e-07 1.7e-05 25.9 1.8 1 23 175 197 175 197 0.99
6 21 3.1e-05 0.00088 20.4 4.5 1 23 203 225 203 225 0.99
7 21 5.6e-06 0.00016 22.8 2.2 1 23 231 253 231 253 0.99
8 21 0.0016 0.046 15.0 4.8 1 23 259 281 259 281 0.99
9 21 0.0055 0.16 13.3 4.5 1 23 287 309 287 309 0.99
10 21 3.1e-05 0.0009 20.4 2.9 1 23 315 337 315 337 0.99
11 21 0.00031 0.0089 17.3 2.1 1 23 343 365 343 365 0.99
12 21 2.8e-05 0.00082 20.5 1.9 1 23 372 394 372 394 0.99
13 21 4.1e-06 0.00012 23.2 1.2 1 23 400 422 400 422 0.96
14 21 1.8e-06 5.3e-05 24.3 2.7 2 23 429 450 428 450 0.97
15 21 0.00083 0.024 15.9 0.3 1 23 456 478 456 478 0.98
16 21 4.4e-05 0.0013 19.9 3.4 1 23 484 506 484 506 0.99
17 21 0.0011 0.032 15.5 1.4 3 23 514 534 512 534 0.98
18 21 0.0016 0.045 15.0 4.2 1 23 540 562 540 562 0.99
19 21 1.6e-05 0.00047 21.3 4.2 1 23 568 590 568 590 0.98
20 21 0.00018 0.0051 18.0 7.9 1 23 596 618 596 618 0.99
21 21 2.6e-05 0.00075 20.7 2.3 1 23 624 646 624 646 0.99

Sequence Information

Coding Sequence
ATGGTAGCTTTGTTACAGGGTATTACTCAATCACATTCAAATTCTCACTCCAAAATTAAGTGTGGCGAAATAGAATTGAATTTGGATCATCATCCCATTCATAGTCGAGAAGAAATTTCAGTTGATTTTCAGAAGGCAAAAACATATTGTAATCCGCTTACTACGCCTCAAATTTCCAACTATAAGTTTAAGTGTGAACTATGTGACTACAAATGTGCACAGAAGCATCGTTTTAAAAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACGGAAGGAACATTTAGAAAAACATTTAAGAAAACATTCAGGTGATAAACCGTTTCAGTGTGACATTTGTGACTACAAGTGTACACAAAAGGGAAGTTTAACAAATCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGGAATTTGTGACTACAAATCTGCAAGGAAGGAAGTTTTAAAAATTCATTTAAGAACGCATTCGGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTACAAATTTGCACGGAAGGAACATTTAGTAAGACATTTAAGAATACATTCAGGTTATAAACCGTTTCAGTGTGACATTTGTGACTATAAATGTGCACATAAGAGTAATTTAAGAGGCCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATCTTCATATAGCTCCAGTTTAAAAAAGCATTTAAGAACGCATTCAGATAATAAACCGTTTCAATGTGAACTTTGTGACTTCAAATGTGCACATAAAAGAAGTTTGAAAGTTCATTTAAGAATACATTCAGGCGATAAATCGTTTCAGTGTGAAATTTGTGACTACAAATGTGCACGGAAGGTTCAATTAGAATGTCACTTACGAACGCATGCAGGTGATAAACCGTTTCAGTGTGAAATTTGCGACCATAAATCTTCTTATAGCTCTGGTTTAAAAAGGCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAATGTGAACTTTGTAACTACAAATGTGCATATAAAGCAGGATTGAAAGTTCATTTAAGAACACATTCAGGCGATGATAAACCGTTTCAGTGCGAAATTTGCGATTATAAATCTTCATATAGCTCCAGTTTAAAAAGTCACTTAAAAACGCATTCAGGAGATAAACTGTTTCTGTGCGAAATTTGTGGCTGCAAGTTTGCAAATAACGTAAATTTAAAAGCTCATTTAAGAACGCATTCGGACGATAAACAGTTGCAGTGTGAAATTTGTGGCTACAAATGTAAGCAGAGCGGAAATTTAAAAAGGCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGCACTTTGTGATTATAAATCTGCAAATAAAGGAGATTTAAAAGTTCACTTAACAACGCATTCGGGCGATAAACCGTTTCAGTGTGAAATTTGCGACTACAAATGTGCACTGAAGCAAAATTTAAAAAGGCATTTAAGAACGCATTCAGGTGATAAACCGTTTTGGTGTGAAATTTGTAGTTACAAATGTGCACAGAAAGGAACTTTAAACGTTCATTTAAGAACGCATTCAGGCGATAAACCGTTTCAGTGTGAAATTTGCGACTATAAATCTTCATGTAGCTCCAGTTTAAAAAAGCATTTAAGAACGCATTCAGGAAATAAACCGTTTCATTGCAAAATTTGTGACCACAAATTTGCAAATAAAGGAGATTTAAAAGTTCATTTAAGAACGCATTCTGGCGATAAACCGTTTCAGTGTGAAATTTGCGACTACAAATGTGCACAAAAGCATCATTTAAAGAGTCACTTAAGAACGCATTCTGGCGATAAACCGTTTCAGTGTGTAATTTGCAACTATAAATCTTCATATAGCTCCAGTTTAAAAAGGCATTTAAGAACGCATTCAGGAGATAAACAGTCAGTGTGA
Protein Sequence
MVALLQGITQSHSNSHSKIKCGEIELNLDHHPIHSREEISVDFQKAKTYCNPLTTPQISNYKFKCELCDYKCAQKHRFKSHLRTHSGDKPFQCEICDYKCARKEHLEKHLRKHSGDKPFQCDICDYKCTQKGSLTNHLRTHSGDKPFQCGICDYKSARKEVLKIHLRTHSGDKPFQCEICDYKFARKEHLVRHLRIHSGYKPFQCDICDYKCAHKSNLRGHLRTHSGDKPFQCEICDYKSSYSSSLKKHLRTHSDNKPFQCELCDFKCAHKRSLKVHLRIHSGDKSFQCEICDYKCARKVQLECHLRTHAGDKPFQCEICDHKSSYSSGLKRHLRTHSGDKPFQCELCNYKCAYKAGLKVHLRTHSGDDKPFQCEICDYKSSYSSSLKSHLKTHSGDKLFLCEICGCKFANNVNLKAHLRTHSDDKQLQCEICGYKCKQSGNLKRHLRTHSGDKPFQCALCDYKSANKGDLKVHLTTHSGDKPFQCEICDYKCALKQNLKRHLRTHSGDKPFWCEICSYKCAQKGTLNVHLRTHSGDKPFQCEICDYKSSCSSSLKKHLRTHSGNKPFHCKICDHKFANKGDLKVHLRTHSGDKPFQCEICDYKCAQKHHLKSHLRTHSGDKPFQCVICNYKSSYSSSLKRHLRTHSGDKQSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-