Rful004571.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:15535106-15537067[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.001 0.03 15.6 0.4 1 23 41 63 41 63 0.98
2 22 4e-05 0.0011 20.1 3.0 2 23 70 91 69 91 0.98
3 22 0.0038 0.11 13.8 0.3 1 23 97 119 97 119 0.99
4 22 8.4e-05 0.0024 19.1 3.3 1 23 125 147 125 147 0.99
5 22 3.1e-05 0.0009 20.4 0.7 1 23 153 175 153 175 0.99
6 22 2.9e-05 0.00084 20.5 1.1 1 23 181 203 181 203 0.99
7 22 0.0052 0.15 13.4 4.0 1 23 209 231 209 231 0.99
8 22 1.8e-06 5.1e-05 24.3 1.5 1 23 237 259 237 259 0.99
9 22 0.002 0.059 14.7 6.6 1 23 265 287 265 287 0.99
10 22 4.1e-05 0.0012 20.0 3.0 1 23 293 315 293 315 0.99
11 22 5.3e-07 1.5e-05 26.0 3.1 1 23 321 343 321 343 0.99
12 22 0.00013 0.0038 18.4 1.4 1 23 349 371 349 371 0.99
13 22 0.0029 0.084 14.2 6.9 1 23 377 399 377 399 0.98
14 22 3.7e-05 0.0011 20.2 3.2 1 23 405 427 405 427 0.99
15 22 0.00013 0.0038 18.4 1.4 1 23 433 455 433 455 0.99
16 22 2.3e-05 0.00067 20.8 3.2 1 23 461 483 461 483 0.99
17 22 0.0012 0.035 15.4 4.8 1 23 489 511 489 511 0.98
18 22 0.00016 0.0046 18.2 5.9 1 23 517 539 517 539 0.99
19 22 0.00047 0.014 16.7 4.5 1 23 545 567 545 567 0.98
20 22 0.00029 0.0084 17.4 1.2 1 23 573 595 573 595 0.99
21 22 4.7e-06 0.00014 23.0 0.8 1 23 601 623 601 623 0.99
22 22 4.6e-06 0.00013 23.0 1.7 1 23 629 651 629 651 0.99

Sequence Information

Coding Sequence
ATGGTAGCTTTGTTACAGGGTACTACTCTATCACATTCAAATCGTCTATCCAAAAGTAAAAGTGAAGAAATAGAATTGAATTGTAATCCGCTTACTACCCCGGAAATTTCTAACTATAAGTTTAAGTGTGAACTATGTGAATACAAATCTGCAAGTAAAGGAAATTTAAAAGTTCATTTAGGAACACATTCGGGAGATAAACCGATTCAGTGTGAAATTTGTGACTATAAATGTGCACAGAAGCGATATTTAAAAAGGCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATCTGCATGGAAGGGAACTTTAAAAATTCATTTAAGAACACATTCAGGAGATAAACCGTTTCAATGTGAACTTTGTGACTACAAATGTATACAGAAGGGAACTTTAAAAAACCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATCTGCAAGGAAGGTAACTTTAAAAATTCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTGAACTTTGTGATTACAAAAGTACACAAAAGCAAAATTTAATCATCCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAATGTGAACTCTGTGACTACAAATGTACAACGAATGCAAGTTTAAAATTTCATTTAAGAACACATTCAGGAGACAAACCGTTTCAGTGTGAAATTTGTGATTACAAATTTGCACAGAAGCAACAATTAAAAATCCATTTAAGAAAGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACATCGGAGTAGTTTTAATTATCACTTAAGAAAGCATTCAGGAGATAAACCGTTTCAATGTGAACTTTGTGACTACAAATGTACAACAAAGGCAACTTTAAATATTCATTTAAGAACGCATTCAGGATATAAACCTTTTCAGTGTGAAATTTGTGATTACAAATTTGCACAGAAGGAACATTTAAAAAACCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGGAATTTGTGACTACAAATGTGCAGTGAAGAGTACTTTAGTAAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCACTGTGAAATTTGTGACTATAAATGTGCACATAGGAATAGTTTAAAAATTCATTTAAGAACGCATTCAGGAGATAAACCTTTTCAGTGTGAAATTTGTGACTACAAATGTGCACAGAAGCAACTTTTAAAAAACCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAATGTGGAATTTGTGACTACAAATGTGCAGTGAAGAGTACTTTAGTAAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACAGAAGAAAAGTTTAAAAATCCATTTAAGAACGCATTCAGGAGATAAACCGTTTCACTGTGAAATTTGTGACTACAAATGTACAATGAAGGCAACTTTAAAAATTCATTTAAGAACGCATTCAGGATATAAACCTTTTCAGTGTAAAATTTGTGACTATAAATGTGCACACAAGAATAGTTTAAAAATCCATTTAAGAACGCATTCAGGAGATAAACCGTTTCACTGTGAAATTTGTGACTATAAATGTGCACGTAGGAATAGTTTAAATATTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAATGTGAAATTTGTGACTATAAAAGTGCATATAGGAATAGTTTAAAAATTCATTTAAGAAAGCATTCAGGAAATAAACCTTTTCAGTGTGATATTTGTGACTATAAAGGTGCACAGAAGAGTAATTTAAAAAGTCATTTAAGAACGCATTCGGGCGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAAAGTGCACGGAGGCAAAATTTAAAAAGGCATTTAAGAACACATTCATGTTGA
Protein Sequence
MVALLQGTTLSHSNRLSKSKSEEIELNCNPLTTPEISNYKFKCELCEYKSASKGNLKVHLGTHSGDKPIQCEICDYKCAQKRYLKRHLRTHSGDKPFQCEICDYKSAWKGTLKIHLRTHSGDKPFQCELCDYKCIQKGTLKNHLRTHSGDKPFQCEICDYKSARKVTLKIHLRTHSGDKPFQCELCDYKSTQKQNLIIHLRTHSGDKPFQCELCDYKCTTNASLKFHLRTHSGDKPFQCEICDYKFAQKQQLKIHLRKHSGDKPFQCEICDYKCAHRSSFNYHLRKHSGDKPFQCELCDYKCTTKATLNIHLRTHSGYKPFQCEICDYKFAQKEHLKNHLRTHSGDKPFQCGICDYKCAVKSTLVSHLRTHSGDKPFHCEICDYKCAHRNSLKIHLRTHSGDKPFQCEICDYKCAQKQLLKNHLRTHSGDKPFQCGICDYKCAVKSTLVSHLRTHSGDKPFQCEICDYKCAQKKSLKIHLRTHSGDKPFHCEICDYKCTMKATLKIHLRTHSGYKPFQCKICDYKCAHKNSLKIHLRTHSGDKPFHCEICDYKCARRNSLNIHLRTHSGDKPFQCEICDYKSAYRNSLKIHLRKHSGNKPFQCDICDYKGAQKSNLKSHLRTHSGDKPFQCEICDYKSARRQNLKRHLRTHSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-