Rful010074.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:12220533-12222545[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00043 0.012 16.8 0.4 1 23 58 80 58 80 0.99
2 22 1.2e-06 3.4e-05 24.9 1.1 1 23 86 108 86 108 0.99
3 22 0.00017 0.0049 18.1 6.4 1 23 114 136 114 136 0.99
4 22 1.3e-05 0.00038 21.6 2.9 1 23 142 164 142 164 0.99
5 22 8.2e-05 0.0024 19.1 2.3 1 23 170 192 170 192 0.99
6 22 0.00021 0.0062 17.8 1.4 1 23 198 220 198 220 0.99
7 22 0.00052 0.015 16.6 2.1 1 23 226 248 226 248 0.98
8 22 0.0034 0.099 14.0 3.6 1 23 254 276 254 276 0.99
9 22 0.0002 0.0057 17.9 0.5 1 23 282 304 282 304 0.99
10 22 3.6e-07 1e-05 26.5 3.4 1 23 310 332 310 332 0.99
11 22 0.00017 0.0049 18.1 1.4 1 23 338 360 338 360 0.99
12 22 3.4e-05 0.00099 20.3 1.9 1 23 366 388 366 388 0.99
13 22 0.00018 0.0051 18.0 2.6 1 23 394 416 394 416 0.98
14 22 8e-06 0.00023 22.3 1.9 1 23 422 444 422 444 0.99
15 22 0.00013 0.0038 18.4 0.6 1 23 450 472 450 472 0.98
16 22 5.5e-05 0.0016 19.6 1.4 1 23 478 500 478 500 0.99
17 22 0.092 2.7 9.5 8.4 1 23 506 528 506 528 0.99
18 22 0.0014 0.042 15.2 0.7 1 23 534 556 534 556 0.99
19 22 5.2e-05 0.0015 19.7 0.7 1 23 562 584 562 584 0.99
20 22 3e-05 0.00086 20.5 2.8 1 23 590 612 590 612 0.99
21 22 4.5e-05 0.0013 19.9 3.8 1 23 618 640 618 640 0.99
22 22 9.2e-07 2.6e-05 25.2 0.9 1 23 646 668 646 668 0.99

Sequence Information

Coding Sequence
ATGTTAGCTTTGTTACAGGGTACTACTCTATCACATTGTGACGAAATAGAATTGAATTTGGATAAGTTACATCATCATCCCATTCACAGTCGAGAAGAGATTTCAGTTCATTTTCAGAAGACAAAAACGGATTGTAATCCGCTTAGTACGCCGGAAATTTCAAACTATAACTTTAAGTGTGAACTATGCGAATACAAATCTGCAAGTAAAGGAGGTTTAAAAGTTCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGATTACAAATTTACACAGAAGCAAAGTTTAATAAACCATTTAAGAATACATTCAGGAGATAAACCTTTTCAGTGTGAAATTTGTAATTACAAATGTGCACAGAAGCAACATTTAAAAACCCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGATTACAAATGTGCACAGAAGCAAAATTTAATGAACCATTTAAGAACACACTCAGGAGATAAACCATTTCAGTGTGAATTTTGTGACTATAAATCTGCACAGAAGCAAAATTTAAAAAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTAAAATTTGTGACTATAAATCTGCAAGTAAATTAGGTTTAAAAAGGCATTTAAAAACGCATTCAACAGATAAACCGTTTCACTGTGAACTTTGTGACTACAAATCTGCAAGGAAAGAAGATTTAAAGGTTCATTTAAGAAGGCATTCGGACAATAAACCGTTTCAGTGTGGAATTTGTGACTATAAATGTGCACTTAAGAAAAGTTTAAAATATCATTTAAAAACGCATTCAGGAGATCAACCGTTTCAATGTGAACTTTGTAATTACAAATCTGCAAGTAAAGGAGGTTTAAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTTTCAGTGTAAAATTTGTGACTACAAATTTACACAGAAACAAAATTTAAATACTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGATTACAAATTTACAAAGAAGCAAATTTTAATTAACCATTTAAGAACACATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAATTACAAATGTGCACAGAAGCCAAATTTAGTTCAGCATTTAAGAACACATTTAGGAGATAAACCGTTTCATTGTGAAATTTGTAATTCCAAATTTGCACAGAAGCAAAGTTTAATAAACCATTTAAGAACACATTCAGGAGATAAACCATTTCAGTGTGAAATTTGTGATTATAAATCTACACAGAAGCAAAATTTAAATACTCATTTAAGAACGCATTCAGGACATAAACCGTTTCAGTGTCAAATTTGTGACTATAAATCTGCAACTAAAGGAGGTTTAAATAGGCATTTAACAACGCATTCAGCAGATAAACCGTTTCAATGTAAACTTTGTGACTATAAATCTGCAAGGAAAGAAGATTTAAAGGTTCATTTAAGAAGGCATTCGGACAATAAACTGTTTCAGTGTAGATTTTGTGACTATAAATGTGCACATACGAAAAGTTTAAAATATCATTTAAGAACGCATTCAGGAAATCAATCGTTTCAATGTGAACTTTGTAATTACAAATCTGCAAGTAAATTAGGTTTAAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTTTCAGTGTAAAATTTGTAACTACAAATCTGCAAGTAAAGGAGGTTTAAAAGTTCATTTAAGAACACATTCAGGAGATAAACCATTTCAGTGTGAAATTTGTGACTATAAATCTGCACATAAGCAAAATTTAACAAACCATTTAAGAACACATTCGGGCGATAAACCGTTTCAGTGTGAACTTTGTGATTACAAATGTGCACAGCAGCAAAATTTAAAAAAGCATTTAAGATCACATTCAGGCGATAAACCGTTTCAGTGTGACATTTGTGATTACAAATTTGCACAGAATCAAGATTTAAAAAAACATTTAAGAATACATTCACGTTGA
Protein Sequence
MLALLQGTTLSHCDEIELNLDKLHHHPIHSREEISVHFQKTKTDCNPLSTPEISNYNFKCELCEYKSASKGGLKVHLRTHSGDKPFQCEICDYKFTQKQSLINHLRIHSGDKPFQCEICNYKCAQKQHLKTHLRTHSGDKPFQCEICDYKCAQKQNLMNHLRTHSGDKPFQCEFCDYKSAQKQNLKSHLRTHSGDKPFQCKICDYKSASKLGLKRHLKTHSTDKPFHCELCDYKSARKEDLKVHLRRHSDNKPFQCGICDYKCALKKSLKYHLKTHSGDQPFQCELCNYKSASKGGLKVHLRTHSGDKPFQCKICDYKFTQKQNLNTHLRTHSGDKPFQCEICDYKFTKKQILINHLRTHSGDKPFQCEICNYKCAQKPNLVQHLRTHLGDKPFHCEICNSKFAQKQSLINHLRTHSGDKPFQCEICDYKSTQKQNLNTHLRTHSGHKPFQCQICDYKSATKGGLNRHLTTHSADKPFQCKLCDYKSARKEDLKVHLRRHSDNKLFQCRFCDYKCAHTKSLKYHLRTHSGNQSFQCELCNYKSASKLGLKVHLRTHSGDKPFQCKICNYKSASKGGLKVHLRTHSGDKPFQCEICDYKSAHKQNLTNHLRTHSGDKPFQCELCDYKCAQQQNLKKHLRSHSGDKPFQCDICDYKFAQNQDLKKHLRIHSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-