Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:15163259-15165790[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.12 3.4 9.2 4.5 1 23 62 85 62 85 0.96

2 28 0.00017 0.005 18.1 2.7 1 23 91 113 91 113 0.98

3 28 2.3e-05 0.00067 20.8 1.9 1 23 119 141 119 141 0.98

4 28 0.00014 0.0042 18.3 2.6 1 23 147 169 147 169 0.98

5 28 0.00047 0.013 16.7 2.4 1 23 175 197 175 197 0.97

6 28 0.00028 0.0082 17.4 0.9 1 23 203 225 203 225 0.98

7 28 0.00021 0.006 17.8 3.9 1 23 231 253 231 253 0.98

8 28 8.2e-05 0.0024 19.1 1.5 1 23 259 281 259 281 0.98

9 28 0.00023 0.0066 17.7 2.1 1 23 287 309 287 309 0.98

10 28 0.00022 0.0062 17.8 4.1 1 23 315 337 315 337 0.98

11 28 0.0021 0.06 14.7 2.1 1 23 343 365 343 365 0.97

12 28 0.0024 0.071 14.4 2.0 1 23 371 393 371 393 0.98

13 28 0.00015 0.0043 18.3 4.1 1 23 399 421 399 421 0.98

14 28 0.0018 0.051 14.9 3.3 1 23 427 449 427 449 0.97

15 28 7e-05 0.002 19.3 2.4 1 23 455 477 455 477 0.98

16 28 0.0036 0.1 13.9 2.8 1 23 483 505 483 505 0.98

17 28 0.00061 0.017 16.4 0.8 1 23 511 533 511 533 0.97

18 28 4e-06 0.00011 23.2 0.6 1 23 539 561 539 561 0.98

19 28 3.5e-05 0.001 20.3 1.7 1 23 567 589 567 589 0.98

20 28 0.00059 0.017 16.4 4.8 3 23 597 617 595 617 0.98

21 28 0.0011 0.033 15.5 5.5 1 23 623 645 623 645 0.97

22 28 0.0017 0.05 14.9 0.5 1 23 651 673 651 673 0.97

23 28 0.00031 0.0088 17.3 1.4 1 23 679 701 679 701 0.97

24 28 1.3e-05 0.00037 21.6 0.9 1 23 707 729 707 729 0.97

25 28 2.4e-05 0.00071 20.7 3.3 1 23 735 757 735 757 0.98

26 28 0.0035 0.1 14.0 0.9 1 23 763 785 763 785 0.97

27 28 0.0022 0.065 14.6 1.5 1 23 791 813 791 813 0.98

28 28 0.002 0.058 14.7 4.6 1 23 819 841 819 841 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.12	3.4	9.2	4.5	1	23	62	85	62	85	0.96
2	28	0.00017	0.005	18.1	2.7	1	23	91	113	91	113	0.98
3	28	2.3e-05	0.00067	20.8	1.9	1	23	119	141	119	141	0.98
4	28	0.00014	0.0042	18.3	2.6	1	23	147	169	147	169	0.98
5	28	0.00047	0.013	16.7	2.4	1	23	175	197	175	197	0.97
6	28	0.00028	0.0082	17.4	0.9	1	23	203	225	203	225	0.98
7	28	0.00021	0.006	17.8	3.9	1	23	231	253	231	253	0.98
8	28	8.2e-05	0.0024	19.1	1.5	1	23	259	281	259	281	0.98
9	28	0.00023	0.0066	17.7	2.1	1	23	287	309	287	309	0.98
10	28	0.00022	0.0062	17.8	4.1	1	23	315	337	315	337	0.98
11	28	0.0021	0.06	14.7	2.1	1	23	343	365	343	365	0.97
12	28	0.0024	0.071	14.4	2.0	1	23	371	393	371	393	0.98
13	28	0.00015	0.0043	18.3	4.1	1	23	399	421	399	421	0.98
14	28	0.0018	0.051	14.9	3.3	1	23	427	449	427	449	0.97
15	28	7e-05	0.002	19.3	2.4	1	23	455	477	455	477	0.98
16	28	0.0036	0.1	13.9	2.8	1	23	483	505	483	505	0.98
17	28	0.00061	0.017	16.4	0.8	1	23	511	533	511	533	0.97
18	28	4e-06	0.00011	23.2	0.6	1	23	539	561	539	561	0.98
19	28	3.5e-05	0.001	20.3	1.7	1	23	567	589	567	589	0.98
20	28	0.00059	0.017	16.4	4.8	3	23	597	617	595	617	0.98
21	28	0.0011	0.033	15.5	5.5	1	23	623	645	623	645	0.97
22	28	0.0017	0.05	14.9	0.5	1	23	651	673	651	673	0.97
23	28	0.00031	0.0088	17.3	1.4	1	23	679	701	679	701	0.97
24	28	1.3e-05	0.00037	21.6	0.9	1	23	707	729	707	729	0.97
25	28	2.4e-05	0.00071	20.7	3.3	1	23	735	757	735	757	0.98
26	28	0.0035	0.1	14.0	0.9	1	23	763	785	763	785	0.97
27	28	0.0022	0.065	14.6	1.5	1	23	791	813	791	813	0.98
28	28	0.002	0.058	14.7	4.6	1	23	819	841	819	841	0.97

Sequence Information

Coding Sequence: ATGGAACGCATCGACCAAGTATCGGAACCTCTCGATAATTCTAGTAGTCATGAAATTGAAGTAGAAGATGCGAAGTTTAATTTAGAAGATTTACATCACTCGATAGACATCAAAGACGAGGACGAGAGCGATGCTGAACAACTACCACTGGAGCAACCCGTAAGAAAAACTAAAAACTCAAATTTTATTTGTCAGTTTTGTGATTATAAATGTGCACAAAGAAGATATTTAAAAGAACATTATTTAAGAACTCACACAGGTGAGAAACCTTTTTCTTGTGCGATTTGTGACTATAAATGTGTAAGAAAAGAATATTTAAAAGAACATTTAAGAACTCACACAGGTGAGAAACCTTTTTCTTGTGAGATTTGTGACTATAAATGTGCACAAAGAGGAAATTTAAAAGAACATTTAAGAACTCACACTGGTGAGAAACCTTTTTCTTGTGAGATTTGTGACTATAAATGTGCAAGAAAAGCATATTTAAAAGATCATTTAAAAACTCACACAGGTGAGAAACCTTTTGCTTGTGAAATCTGTGACTATAAATGTGCAGTAAGAAAAAGTTTAAAAAGGCATTTAAAAACTCATACAGGCGAGAAACCTTTTTCTTGTGAGATTTGTGACTATAAATATGCATTAAGAGAAAGTTTAAAAAGTCATTTAAAAACTCATACGGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACACAGAACAAATTTAAAGGAACATTTACGAACTCACACAAGAGAAAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACAAAAAGGATATTTAAAAGAACATTTAAGAACTCACACAGGTGAGAAACCTTTTTCTTGTGAGATTTGTGACTATAAATGTGCAAACAGAGGAGTTTTAAAAAAACATTTAAGAACCCACACAGGTGAGAAACCTTTTTCTTGTAAAATTTGTGATTATAAATGTGCAAGAAAAGAATATTTAAAAGATCATTTAAAAACTCACACAGGTGAGAAACCTTTTGCTTGTGAAATCTGTGACTATAAATGTGCAGTAAGAACAACTTTAAAAACTCATTTAAAAACTCATACAGGCGAGAAACCTTTTTCTTGTGAGATTTGTGACTATAAATGTGCAATAAGAGAAAGTTTAAAAAGTCATTTAAAAACTCATACAGGCGAAAAACCTTTTGCTTGTGAGATTTGTGATTATAAATGTGCACACAGAACAAATTTAAACAACCATTTACGAACTCACACAAGAGAAAAACCTTTTGCTTGCGAGATTTGCGGCTATAAATGTGCAAAGAGAGAATGTTTAAAAAGACATTTAGCAACTCACACGGGCGAGAAACCATTTGCTTGTGAGATTTGTGATTATAAATGTGTAAGAAGAGAATCGTTAAAAACACATTTAAGAACTCACACAGGTGAGAAACCTTTTTCTTGTAAGATCTGTGACTATAAATGTGCACAAAGAGCATATGTAAAAGAACATTTAAAAACCCACACAGGCGAGAAACCTTTTGTTTGTTGGATTTGTGACTATAAATGTGCACAAAAAGCAAGTTTAAAAGAACATTTAAAAGCTCACACATGTGAAAAACCTTTTGTTTGCGAGATTTGTGACTATAAATTTGCAAGAAGATTTGCTTTAAAAATACATTTAAGAACCCACACAGGCGAGAAACCATTTGTTTGTGAAATTTGTGACTATAAATGTGCACGGAGAGGAGATTTAAAAAACCATTTAAAAACTCACACAGGCGAGAAACCTTTTGGTTGTAAAATTTGTAATTATAAATGTGCAAGAAAAGATCATTTAATAACACATTTAAGAACTCACACAGGCGAGAAACCTTTTGCTTGTGAGCATTGTGACTATAAATGTACACAGAAGCAATCTTTAAATGAACATTTAAAAACTCACACGGGTGAGAAACCTTTTGCTTGTGAGATATGTGATTATAAATGTGCACAAAGAGGACGTTTAGAAGAACATTTAAGAATTCACTCAGGCGAGAAACCTTTTGCTTGTGTGATTTGTGATTATAAATGTGCAAAAAAGGCAAATTTAAAAGTACATTTAAAAACTCACACAGGCGAGAAACCTTTTGCTTGCGAGATATGTGATTATAAATTTGCACAAAGAGTACATTTAAAAGAACATTTAAGAATTCACTCAGGCGAAAAACGTTTTGCTTGTGAGATTTGTGACTATAAATGTGCAAGAAGAGATCATTTAATAAGACATTTAAGAACTCACACAGGCGAGAAACCTTTTGCTTGTGATATTTGTGAATATAAATGTGCAGAAAAAGCAAAATTAAAAATACATGTAAGAACTCACACGGGTGAAAAACCTTTTGCTTGTGAGATTTGTAACTATAAATGTGCAGAAAGAGAAGTTTTAAAAAGACATTTAAGAACTCACACTGGTGAAAAACCTTTTGCTTGTGAGATCTGTGATTATAAATGTGTTCAAAATAGATCTTTAAAACATCATTTAAAAAGTCACAATGCATAG
Protein Sequence: MERIDQVSEPLDNSSSHEIEVEDAKFNLEDLHHSIDIKDEDESDAEQLPLEQPVRKTKNSNFICQFCDYKCAQRRYLKEHYLRTHTGEKPFSCAICDYKCVRKEYLKEHLRTHTGEKPFSCEICDYKCAQRGNLKEHLRTHTGEKPFSCEICDYKCARKAYLKDHLKTHTGEKPFACEICDYKCAVRKSLKRHLKTHTGEKPFSCEICDYKYALRESLKSHLKTHTGEKPFACEICDYKCAHRTNLKEHLRTHTREKPFACEICDYKCAQKGYLKEHLRTHTGEKPFSCEICDYKCANRGVLKKHLRTHTGEKPFSCKICDYKCARKEYLKDHLKTHTGEKPFACEICDYKCAVRTTLKTHLKTHTGEKPFSCEICDYKCAIRESLKSHLKTHTGEKPFACEICDYKCAHRTNLNNHLRTHTREKPFACEICGYKCAKRECLKRHLATHTGEKPFACEICDYKCVRRESLKTHLRTHTGEKPFSCKICDYKCAQRAYVKEHLKTHTGEKPFVCWICDYKCAQKASLKEHLKAHTCEKPFVCEICDYKFARRFALKIHLRTHTGEKPFVCEICDYKCARRGDLKNHLKTHTGEKPFGCKICNYKCARKDHLITHLRTHTGEKPFACEHCDYKCTQKQSLNEHLKTHTGEKPFACEICDYKCAQRGRLEEHLRIHSGEKPFACVICDYKCAKKANLKVHLKTHTGEKPFACEICDYKFAQRVHLKEHLRIHSGEKRFACEICDYKCARRDHLIRHLRTHTGEKPFACDICEYKCAEKAKLKIHVRTHTGEKPFACEICNYKCAEREVLKRHLRTHTGEKPFACEICDYKCVQNRSLKHHLKSHNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -