Rful007234.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:11909803-11912799[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 33 0.018 0.53 11.7 7.8 1 23 75 97 75 97 0.99
2 33 0.002 0.057 14.7 1.4 1 23 103 125 103 125 0.98
3 33 0.00013 0.0037 18.5 4.1 1 23 131 153 131 153 0.99
4 33 3e-05 0.00087 20.5 4.7 1 23 159 181 159 181 0.99
5 33 9e-05 0.0026 19.0 4.9 1 23 187 209 187 209 0.99
6 33 9e-05 0.0026 19.0 4.9 1 23 215 237 215 237 0.99
7 33 1.2e-05 0.00035 21.7 2.7 1 23 243 265 243 265 0.99
8 33 0.0028 0.08 14.3 2.5 1 23 271 293 271 293 0.99
9 33 9.6e-05 0.0028 18.9 0.6 1 23 299 321 299 321 0.99
10 33 0.018 0.52 11.7 2.7 1 23 327 349 327 349 0.98
11 33 0.00052 0.015 16.6 1.6 1 23 355 377 355 377 0.99
12 33 5e-05 0.0014 19.8 1.5 1 23 383 405 383 405 0.99
13 33 0.0076 0.22 12.9 2.9 1 23 411 433 411 433 0.98
14 33 0.00041 0.012 16.9 0.7 1 23 439 461 439 461 0.99
15 33 0.00031 0.0089 17.3 1.1 1 23 467 489 467 489 0.98
16 33 0.00016 0.0047 18.2 3.9 1 23 495 517 495 517 0.99
17 33 0.11 3.1 9.3 2.3 1 23 523 545 523 545 0.98
18 33 0.00016 0.0046 18.2 4.5 1 23 551 573 551 573 0.99
19 33 0.0012 0.036 15.4 1.6 1 23 579 601 579 601 0.98
20 33 0.00013 0.0037 18.5 4.1 1 23 607 629 607 629 0.99
21 33 0.0028 0.08 14.3 2.5 1 23 635 657 635 657 0.99
22 33 0.00078 0.022 16.0 1.0 1 23 663 685 663 685 0.98
23 33 0.0028 0.081 14.3 2.7 1 23 691 713 691 713 0.98
24 33 0.048 1.4 10.4 2.6 1 23 719 741 719 741 0.98
25 33 0.00012 0.0035 18.5 3.2 1 23 747 769 747 769 0.99
26 33 0.00017 0.0048 18.1 3.1 1 23 775 797 775 797 0.99
27 33 3.8e-05 0.0011 20.1 1.8 1 23 803 825 803 825 0.99
28 33 0.052 1.5 10.3 4.1 1 23 831 853 831 853 0.98
29 33 7.5e-05 0.0022 19.2 2.2 1 23 859 881 859 881 0.99
30 33 0.00014 0.0039 18.4 5.2 1 23 887 909 887 909 0.99
31 33 0.00011 0.0031 18.7 4.4 1 23 915 937 915 937 0.98
32 33 0.00091 0.026 15.8 0.5 1 23 943 965 943 965 0.98
33 33 9.5e-05 0.0027 18.9 4.9 1 23 971 993 971 993 0.99

Sequence Information

Coding Sequence
ATGGCACACTTAATAATGGTAGCTTTGTTACAGGACACTCGATTGAATTCAAATAGCCACTCCCAAATTAAGACTGAAGAAATAGAATTGAACTTGGATAAATTGCATCATCACCCTGTTAATATTCAAGAAGAGTTTTTAGTTCAGCTTAAGAAGACAGAAACAAATTGTGATCCGCTTACTACGCATAAAATTCCCAACTGTAAGTTAGCAGATAAACCATTTAAGTGTTCAATTTGTGACTACAAATCTACAAATAAGCATAATTTAAAATGTCATTTAAGAACGCATTCAGGAGATAAACCGTTCCAATGTGAATTTTGTGACTTTAAATCAGTATTTAAGGGAAATTTAAAACGTCATTTAATAATGCATTCCGGTGATACGCCGTTTCAGTGTAACATTTGTGACTATAAATCTAAACATAAACAAAGTTTGGAAAATCATTTAAGAACGCATTCAGGTGATAAACCGTTTCAGTGTGAAATTTGTGATTACAAATGTGCTCAGAAGGGACATCTAAAAAATCATTTAAGAACGCATTCAGGTGATAAACCGTTTCAGTGTGACATTTGTGATTTCAAATGTGCTCAGAAAGGACATCTAAAAAATCATTTAAGAACGCATTCAGGTGATAAACCGTTTCAGTGTGACATTTGTGATTTCAAATGTGCTCAGAAGGGACATCTAAAAAATCATTTAAGAACGCATTCAGGTGATAAACCGTTTCAGTGTGAAATTTGTGATTACAAATGTGCTCAGAAGGGACAACTAAAAAATCATTTAAGAACGCATTCAGGTGATAAACCGTTTCAGTGTGACATTTGTGATTTCAAATCCGCACATGAGAAAAGTTTAAATTATCATTTACGAACGCATTCAGGTGATAAACCGTTTAAGTGTGACATTTGTGACTATAAATCTATAAATAAACCAAGTTTGGAAAATCATATACGAAAACATTCAGGTGATACACCGTTTCACTGTGACAGTTGTGACTATAAATCAACACTTAAGGCAAGTTTAAAAATTCATTTAAGAACCCATACAGGTGATAAACCGTTTCAGTGCGAAATTTGTGACTACAAATGTGCACAGAAGATGAGTTTAGATAATCATTTAAGAATACATTCCGGCGATAAACCATTTAAGTGTAACATTTGTGCCTATAAATCTATAACAAAAGCAAATTTAAAACGACATTTAAGAACGCATTTAACCGATAAACCGTTTCACTGTGACATTTGTGAATTCAAATCCGCGCATGAGGAAAGTTTAGAACGTCATTTAAGAACGCATTCAGGTGATAAACCGTTTCAGTGTGACATTTGTGACTATAAATCTATAGATAAAGAAGGTTTAAAATATCATTTACGAAAGCATTCGGGTGATAAACCGTTTCAGTGTGACATTTGTGACTATAAATCTATAACAAAAGCAAATTTAAAATTACATTCAAGAAGGCATTTAGCCGATAAACCGTTTAAGTGTGACATTTGTGACTATAAATCTAAACATAAACAAAGTTTGGAAAATCATTTAAGAACGCATTCAGGTGATAAACCGTTTAAGTGTGACATTTGTGTCTATAAATCTGTACATAAACAAGGTTTAAAATTACATTCAAGAATGCATTTAGCCGATAAACCGTTTAAGTGTAACATTTGTGACTATAAATCTAAACATAAACAAAGTTTGGAAAATCATTTAAGAACGCATTCAGGTGATGAAGCGTTCCAATGTGAATTTTGTGACTTTAAATCAGTATTTAAGGGAAATTTAAAACGTCATTTAATAACGCATTCCGGTGATACGCCGTTTCAGTGTAACATTTGTGACTATAAATCTAAACATAAACAAAGTTTGGAAAATCATTTAAGAACGCATTCAGGTGATAAACCGTTTCAGTGTGACATTTGTGATTTCAAATCCGCACATGAGAAAAGTTTAAATTATCATTTACGAACGCATTCAGGTGATAAACCGTTTCAGTGTGACATTTGTGACTATAAATCTATAAAAAAAGGAAATTTAAAATTACATTCAAGAATGCATTTAGCCGATAAACCGTTTAAGTGTAACATTTGTGACTATAAATCTATACATAAACTAAGTTTGGAAAATCATTTACGAAACCATTCAGGTGATAAACCGTTTCACTGTGACAGTTGTGACTATAAATCAGCACTTAAGGCAACTTTAAAAACTCATTTAAGAACGCATTCAGGTGATAAACCGTTTCAGTGTGACATTTGTGACTACAAATGTGCACAGCGGACATCTTTAAATAATCATTTAAGAAGACATTCAGGCGATAAACCATTTAAGTGTAACATTTGTGACTATAAATCTACACAAAAGCCACATTTAAAACAACATTTGATAACGCATTTAACCGATAAACCGTTTAAGTGTAACATTTGTGACTACAAATCTGCAAATAAGCGTAGTTTAGAACGTCATTTAAAAACGCATTCAGGTGATAAACCGTTTCAGTGTGAAATTTGTGGCCACAAATTTGCTGAGAAGAACTATTTAGATTGTCATTTAAGAACGCATTCAGGTGATAAACCGTTTCAGTGTGATATTTGTGACTATAAATGTACACAGAAGATAACTTTAATTATTCATTTAAGAACACATTCAGGAGAAAAACCGTTTCAGTGTAAAATTTGTGATCACAAATTTACTCATACGGGAAGTTTAATAAACCATTTAAAAACGCATTCAAGTGATAAACTGTTTCACTGTGACATTTGTGACAACAAATTTGCACAGAAGCGATATTTAAAAAAACATTTAAGAACGCATTCAGGTGATAAACCGTTTCAATGTGAACTTTGTGACTACAAATCTGCAAGTAAAGGAGAATTAACAAGTCATTTAACAACTCATTCGAGCGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGCACAGAAGCGATATTTAAAAAGGCATTTAAGAAAGCATTCAGGTGATAAACCGTAG
Protein Sequence
MAHLIMVALLQDTRLNSNSHSQIKTEEIELNLDKLHHHPVNIQEEFLVQLKKTETNCDPLTTHKIPNCKLADKPFKCSICDYKSTNKHNLKCHLRTHSGDKPFQCEFCDFKSVFKGNLKRHLIMHSGDTPFQCNICDYKSKHKQSLENHLRTHSGDKPFQCEICDYKCAQKGHLKNHLRTHSGDKPFQCDICDFKCAQKGHLKNHLRTHSGDKPFQCDICDFKCAQKGHLKNHLRTHSGDKPFQCEICDYKCAQKGQLKNHLRTHSGDKPFQCDICDFKSAHEKSLNYHLRTHSGDKPFKCDICDYKSINKPSLENHIRKHSGDTPFHCDSCDYKSTLKASLKIHLRTHTGDKPFQCEICDYKCAQKMSLDNHLRIHSGDKPFKCNICAYKSITKANLKRHLRTHLTDKPFHCDICEFKSAHEESLERHLRTHSGDKPFQCDICDYKSIDKEGLKYHLRKHSGDKPFQCDICDYKSITKANLKLHSRRHLADKPFKCDICDYKSKHKQSLENHLRTHSGDKPFKCDICVYKSVHKQGLKLHSRMHLADKPFKCNICDYKSKHKQSLENHLRTHSGDEAFQCEFCDFKSVFKGNLKRHLITHSGDTPFQCNICDYKSKHKQSLENHLRTHSGDKPFQCDICDFKSAHEKSLNYHLRTHSGDKPFQCDICDYKSIKKGNLKLHSRMHLADKPFKCNICDYKSIHKLSLENHLRNHSGDKPFHCDSCDYKSALKATLKTHLRTHSGDKPFQCDICDYKCAQRTSLNNHLRRHSGDKPFKCNICDYKSTQKPHLKQHLITHLTDKPFKCNICDYKSANKRSLERHLKTHSGDKPFQCEICGHKFAEKNYLDCHLRTHSGDKPFQCDICDYKCTQKITLIIHLRTHSGEKPFQCKICDHKFTHTGSLINHLKTHSSDKLFHCDICDNKFAQKRYLKKHLRTHSGDKPFQCELCDYKSASKGELTSHLTTHSSDKPFQCEICDYKCAQKRYLKRHLRKHSGDKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-