Rful004851.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:3383215-3397704[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 0.00057 0.016 16.4 0.3 1 23 57 79 57 79 0.98
2 39 0.0083 0.24 12.8 1.9 1 23 85 107 85 107 0.95
3 39 0.00038 0.011 17.0 1.7 1 23 113 135 113 135 0.99
4 39 0.00062 0.018 16.3 1.4 1 23 141 163 141 163 0.99
5 39 0.00053 0.015 16.5 6.8 1 23 169 191 169 191 0.98
6 39 0.002 0.058 14.7 2.7 1 23 197 220 197 220 0.94
7 39 0.00097 0.028 15.7 0.9 1 23 226 248 226 248 0.98
8 39 0.00034 0.0098 17.1 0.3 1 23 254 276 254 276 0.97
9 39 6.1 1.8e+02 3.8 3.8 1 23 282 304 282 304 0.93
10 39 0.0022 0.064 14.6 2.0 1 23 310 332 310 332 0.98
11 39 0.0027 0.077 14.3 4.2 1 23 338 360 338 360 0.97
12 39 2.8e-05 0.00082 20.5 0.4 1 23 366 388 366 388 0.98
13 39 0.00088 0.025 15.8 1.2 1 23 394 416 394 416 0.98
14 39 0.00073 0.021 16.1 0.5 1 23 422 444 422 444 0.98
15 39 2.6e-05 0.00075 20.7 4.3 1 23 450 472 450 472 0.98
16 39 1.2 35 6.0 5.1 1 23 478 500 478 500 0.98
17 39 0.016 0.45 11.9 0.4 1 23 573 595 573 595 0.98
18 39 0.0064 0.18 13.1 4.6 1 23 601 623 601 623 0.99
19 39 0.0031 0.09 14.1 3.9 1 23 629 651 629 651 0.98
20 39 1.8e-05 0.00053 21.1 0.9 1 23 657 679 657 679 0.98
21 39 0.039 1.1 10.6 4.2 1 23 685 707 685 707 0.97
22 39 1.2e-05 0.00033 21.8 0.3 1 23 713 735 713 735 0.98
23 39 0.00062 0.018 16.3 5.2 1 23 741 763 741 763 0.99
24 39 0.021 0.61 11.5 2.9 1 23 823 845 823 845 0.99
25 39 0.0087 0.25 12.7 4.9 1 23 851 873 851 873 0.99
26 39 0.08 2.3 9.7 3.4 1 23 880 902 880 902 0.98
27 39 0.0038 0.11 13.9 2.5 1 23 908 930 908 930 0.99
28 39 0.018 0.52 11.7 2.2 2 23 935 956 934 956 0.97
29 39 0.00012 0.0034 18.6 3.3 1 23 962 984 962 984 0.98
30 39 0.006 0.17 13.2 0.5 1 23 990 1012 990 1012 0.97
31 39 0.17 5 8.6 4.5 2 23 1019 1040 1018 1040 0.97
32 39 0.001 0.029 15.6 0.3 1 23 1046 1068 1046 1068 0.98
33 39 0.0018 0.052 14.8 2.0 1 23 1074 1096 1074 1096 0.98
34 39 0.0018 0.052 14.9 0.7 1 23 1102 1124 1102 1124 0.99
35 39 0.0021 0.059 14.7 1.5 1 23 1130 1152 1130 1152 0.98
36 39 5.8e-06 0.00017 22.7 0.3 1 23 1158 1180 1158 1180 0.98
37 39 0.00057 0.016 16.4 1.0 1 23 1186 1208 1186 1208 0.96
38 39 0.0016 0.046 15.0 2.8 1 23 1219 1242 1219 1242 0.98
39 39 0.022 0.63 11.5 2.4 1 23 1248 1270 1248 1270 0.98

Sequence Information

Coding Sequence
ATGGAAACCCAAAGCCACTCTAGCATCAACAACCCTCAAATTAAAACGGAAAAAGAAGTAGAATTGAAGTTGGAAGAGTTACACCATTCCATTGATATTAAGGATGAGACTTTTTTTCCGGAATCTCAACCGGTTATAGTATGCAAACGACAAACCATCGAGAACCTGTTTGAGTGTGCAATTTGTGAGTATAAATCTGCGTATAAGGGCAGCTTAAAGAGGCATATAAGAATTCATACCGGTGAGAAACCGTTTACGTGTGAAGTTTGCCAAGCCAAATTTGCACACAGGGAAAGTTTACAAAATCATTTTTCACTTCATACTGGCGAAAAACCCTTTAAGTGTGAAATTTGTGACTGTGAATACGTCCGAAAGGAAAGGTTAGAGGAACATTTAAGAACTCATACCGGAGAGTTTCCTTTCACATGCGATATTTGTGATTATAAATCTAAATATAGGAGAGGTTTAAGAGTTCACATAAAAACTCATACTGGCGAGAAACCATTTAGCTGTGAAGTTTGCGATTGTAAATTTCGACATAAAAAGAGTTTAACCCTTCACTTAAGAACTCATACGGGTGACAAACCGTTCGTATGCGATATTTGTGAATTTAAATTTGCTAACGAAGAACATTTAAAGCGGCACCATTCAAATATTCACATGGGCGAGAAGCCGTACGCTTGTAAAATTTGTGATTATAAATGTGCAGGTAGCGATCGTTTAAAAATACATATGAGAATTCATACGGGAGAAAAACCGTTTGCCTGTCCAACTTGTGGTTTGAAGTACGCAGATAAAAGAAATCTCAAGTATCATTTAGGAACTCACACCGGAGTGAAACCTTTCAAATGTGAATTTTGCGACTATAAATCTTTGTGTAAGGAAAGTTTAAAGATTCACATAAGAACCCACACTGGCGAGAAACCGTTCAAGTGTGATATTTGTGACTATAAATGCAAAGAAAAACCGTATTTAAAAATTCATGCAAGAATTCATACCGGTGAAAAACCGTTCGCTTGTGAATTTTGTGACTATAAATGTACTAATAAAAAATATTTAAAACTTCACTTGAGAATTCATACAGGCGAGAAGCCGTTTGTTTGTGAAATATGTAACCGGAGATTTCCATATAAAGACGGTTTAGTTAAGCACACGAGAATTCACACAGGAGAAAAACCGTATGCATGCAACGTTTGTAACTACAAATGCACGGAGAAAGGAAGTTTAAACATTCATTTGAGGATTCATACAGGCGAGAAACCGTACGCTTGCACTGTTTGTGAATATAAAACTGGACGTAAAGGAGATTTAAGAAGTCATTTAAGAACTCACACTAACGAAAAGCCCTTTAAGTGTAACATTTGTGACTGCAAATTTGTACAGAAATCGCAATTAACAAATCATTTAACAACTCATACCGGCGAAAAGCCGTTTTCTTGTGAAAATTGTGAATTTAAGTGTTCACGCCGACACGTTTTGGTTATTCATAACAGAACTCATACAGGCGAGAAGCCTTATACGTGTAAAGTTTGTGACTACAAAGCTTCACAGAAAGAATCTCAAGGTTACTCAAGTAACTACTCTCAAATTAAGACAGAAGAAGAAATTGAATTGAAGTTGGAAGAGCTACATCATTCAATTGATATTAAGGATGAGACTTATATTCCGGAATCTCAACCGGATTTAGTATGCAAACCACAAACTAGCAAGAAGTTGTTTGAGTGTGAGACTTGCGAATATAAAACTCCGTATAAAGCTAGATTAATAATTCATTTAAGAACTCATACGGGCGACAAACCGTTCAAGTGTGATTTTTGTGAGTATAAATGTAGAGAAAAAGGATATTTAAAAATTCATTTGAGGACTCATACTGGTGAGAAGCCGTTTACTTGTAAAAACTGTGATTATAAATGTGGAGATAAGAGACTTTTAAAAAGTCATTTGAGGATTCATACCGGCGAGAAGCCGTTTATGTGCGAAATATGCAACTACGAATTTGCACATAAACCCGGTTTAGTTAAGCATATGAGGACTCATACAGGAGAAAAACCGCATGTGTGTCAATTTTGTAACTATAAATGTACAGAGAAAGTAAGTTTAAATATTCACTTGAGAATTCATACAGGCCATAAACCGTACGCGTGTGATGTCTGTGGCTACAGAAGTGCACGCAAAGGAGATTTAAGAACTCATATGAGAACTCATATTAGCGAAAAGCCGTTTAAATGTGACACTTGCGGCTACAAATGTGTACAGCTGGGACATTTAAAAAATCATTTAAAAACTCACACAGGCGAGAAATCGTATATGTGTAATGAATCTCAATTTGCCATTAGCTACTGCGAAGTTAAGACGGAAGAAATTGAAGTTAAGCTGGAAGATTTGCATCATTCCATTGACCTCAAAGAAGATCCTTCAATATTGGAGTCTTCGTCGGGTATAGCAACTCCTACTGATGATAAACCATTTACGTGTACATTTTGTGGTTACAAATGTAAACAAAGAGGAGTTTTAGATGATCATGTACGAACTCACACAGGTGAGAAGCCATTTAAGTGTGAATTTTGTGACTACCGAAGTACACATAAAGGAAGCTTAAGATATCATTTAAAAAGTCATAATGGTGCGAAATTTACATTTAAGTGTGGGTTTTGTACCCACGAATATAAACTTAAACGAGATTTAAAAGTACATCTGATGTCTCATAGCGGCGAGAAAGTGTTTAAATGTGAAAATTGTAAATTTAAAAGTACCAATAAAGAAAGTTTAAATGATCACGTTAAAACACACGAAGAACTTTTGAAGTGCAGTGTTTGCGATTATAAATGCGCCTTAAAGGCATCGTTGAAAGCTCATTTCAAGACTCATACCGGTGAGAGACCATTTAAATGTAAAATTTGTACATCTACATTTAAACGACGAACCAATTTGGAAGCTCATTTTAGAAGTCACACAGGCGAAAAACCGTTCACGTGTGATTTATGTGAATATAAAACTGGACGGAAAGAAAATTTAATAAAGCACGTGACCATTCACAATGCCGAAAAACCGTTGAAGTGTAATTATTGTGACTATAAATGTCAATATAAAACAAGATTAGTTGAACATTTAAGAAAGCATACCGGCGAGAGACCGTATAGTTGCGAAATTTGTGATTATAAATCTGCGTTTAAACCAGATTTAAAAGTTCATTTAAGAATGCATACGGGCGAGAAACCGTTCAAGTGTGACATTTGTGAATATGAATGCGCACGAAGGAAAAGTTTAAAAATGCACTTAGCAACTCATACAGGTGAAAAACCGTTTACCTGTAGCTTATGCGATTATAAAACTGCACGTAAAGGAGATTTAGGGAGTCATTTAAAAACGCATTCAAATTACAAACCGTTTAATTGCCAAATTTGCAACCATAAATTAAGAGATGCGGGTAAATTAAATATTCACTTACGAACTCATACAGGCGAAAAACCGTTTACTTGTGAAATTTGTAATCGTAAATTTTCAACTAAGGCAGGATTAAATGCTCATGCAAGAGTACACACTGGGGAAAAGCCCTATCTTTGCAAAATTTGTGACGTTAGATTTTCAGGTTTCAGTTCGTTGAAAAGGCATTCAAGAATTCATAATAAAACAGAGAATAGCGAGAAAGTTTTGTATACGTGTGAAATTTGTCAGCATAAATATTCGATTAAGGAATCCTTAAAGGCTCACTTAAGAAGAAAGCACCGTGGAGAGAAATTATTTAATTGTAAAAGTTGTGATTATAAATGTGACGAAAAGGAGAAATTAGCAATTCATATCAGAACGCATACTGTGAAAATTCAGTTGGAATAA
Protein Sequence
METQSHSSINNPQIKTEKEVELKLEELHHSIDIKDETFFPESQPVIVCKRQTIENLFECAICEYKSAYKGSLKRHIRIHTGEKPFTCEVCQAKFAHRESLQNHFSLHTGEKPFKCEICDCEYVRKERLEEHLRTHTGEFPFTCDICDYKSKYRRGLRVHIKTHTGEKPFSCEVCDCKFRHKKSLTLHLRTHTGDKPFVCDICEFKFANEEHLKRHHSNIHMGEKPYACKICDYKCAGSDRLKIHMRIHTGEKPFACPTCGLKYADKRNLKYHLGTHTGVKPFKCEFCDYKSLCKESLKIHIRTHTGEKPFKCDICDYKCKEKPYLKIHARIHTGEKPFACEFCDYKCTNKKYLKLHLRIHTGEKPFVCEICNRRFPYKDGLVKHTRIHTGEKPYACNVCNYKCTEKGSLNIHLRIHTGEKPYACTVCEYKTGRKGDLRSHLRTHTNEKPFKCNICDCKFVQKSQLTNHLTTHTGEKPFSCENCEFKCSRRHVLVIHNRTHTGEKPYTCKVCDYKASQKESQGYSSNYSQIKTEEEIELKLEELHHSIDIKDETYIPESQPDLVCKPQTSKKLFECETCEYKTPYKARLIIHLRTHTGDKPFKCDFCEYKCREKGYLKIHLRTHTGEKPFTCKNCDYKCGDKRLLKSHLRIHTGEKPFMCEICNYEFAHKPGLVKHMRTHTGEKPHVCQFCNYKCTEKVSLNIHLRIHTGHKPYACDVCGYRSARKGDLRTHMRTHISEKPFKCDTCGYKCVQLGHLKNHLKTHTGEKSYMCNESQFAISYCEVKTEEIEVKLEDLHHSIDLKEDPSILESSSGIATPTDDKPFTCTFCGYKCKQRGVLDDHVRTHTGEKPFKCEFCDYRSTHKGSLRYHLKSHNGAKFTFKCGFCTHEYKLKRDLKVHLMSHSGEKVFKCENCKFKSTNKESLNDHVKTHEELLKCSVCDYKCALKASLKAHFKTHTGERPFKCKICTSTFKRRTNLEAHFRSHTGEKPFTCDLCEYKTGRKENLIKHVTIHNAEKPLKCNYCDYKCQYKTRLVEHLRKHTGERPYSCEICDYKSAFKPDLKVHLRMHTGEKPFKCDICEYECARRKSLKMHLATHTGEKPFTCSLCDYKTARKGDLGSHLKTHSNYKPFNCQICNHKLRDAGKLNIHLRTHTGEKPFTCEICNRKFSTKAGLNAHARVHTGEKPYLCKICDVRFSGFSSLKRHSRIHNKTENSEKVLYTCEICQHKYSIKESLKAHLRRKHRGEKLFNCKSCDYKCDEKEKLAIHIRTHTVKIQLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-