Rful006345.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:13747630-13750680[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 2.3e-06 6.8e-05 23.9 2.9 1 23 66 88 66 88 0.99
2 34 3e-05 0.00086 20.5 2.3 1 23 94 116 94 116 0.99
3 34 0.0036 0.1 13.9 2.2 1 23 122 144 122 144 0.99
4 34 0.00028 0.008 17.4 2.5 1 23 150 172 150 172 0.99
5 34 9.3e-06 0.00027 22.1 2.8 1 23 178 200 178 200 0.99
6 34 0.00018 0.0051 18.0 2.5 1 23 206 228 206 228 0.99
7 34 3.3e-05 0.00097 20.3 1.8 1 23 234 256 234 256 0.99
8 34 0.0036 0.1 13.9 2.2 1 23 262 284 262 284 0.99
9 34 0.00022 0.0063 17.7 5.0 1 23 290 312 290 312 0.99
10 34 0.00064 0.018 16.3 2.9 1 23 318 340 318 340 0.99
11 34 0.00018 0.0051 18.0 2.5 1 23 346 368 346 368 0.99
12 34 3e-05 0.00086 20.5 2.3 1 23 374 396 374 396 0.99
13 34 0.0036 0.1 13.9 2.2 1 23 402 424 402 424 0.99
14 34 0.00022 0.0063 17.7 5.0 1 23 430 452 430 452 0.99
15 34 0.00064 0.018 16.3 2.9 1 23 458 480 458 480 0.99
16 34 3e-05 0.00086 20.5 2.3 1 23 486 508 486 508 0.99
17 34 0.0036 0.1 13.9 2.2 1 23 514 536 514 536 0.99
18 34 0.00028 0.008 17.4 2.5 1 23 542 564 542 564 0.99
19 34 9.3e-06 0.00027 22.1 2.8 1 23 570 592 570 592 0.99
20 34 0.00018 0.0051 18.0 2.5 1 23 598 620 598 620 0.99
21 34 3e-05 0.00086 20.5 2.3 1 23 626 648 626 648 0.99
22 34 0.0036 0.1 13.9 2.2 1 23 654 676 654 676 0.99
23 34 0.00022 0.0063 17.7 5.0 1 23 682 704 682 704 0.99
24 34 0.00064 0.018 16.3 2.9 1 23 710 732 710 732 0.99
25 34 0.00039 0.011 16.9 1.6 1 23 738 760 738 760 0.99
26 34 0.57 17 7.0 3.4 1 23 766 788 766 788 0.98
27 34 5.8e-06 0.00017 22.7 2.1 1 23 794 816 794 816 0.99
28 34 3.2e-05 0.00092 20.4 4.0 1 23 822 844 822 844 0.99
29 34 3.2e-05 0.00092 20.4 4.0 1 23 850 872 850 872 0.99
30 34 4e-05 0.0012 20.1 4.7 1 23 878 900 878 900 0.99
31 34 0.0026 0.076 14.3 5.7 1 23 906 928 906 928 0.99
32 34 0.00012 0.0034 18.6 3.6 1 23 934 956 934 956 0.99
33 34 1.3e-05 0.00037 21.6 3.2 1 23 962 984 962 984 0.99
34 34 0.02 0.57 11.6 1.3 1 23 990 1012 990 1012 0.98

Sequence Information

Coding Sequence
ATGATAGCTTTGTTACAGGGTACTCTATCACATACAAGTCGTCACTCCAAAATTAAGAGTGACAAAATAGAATTGAATTTGGATGAGCTACATCATCATCCCGTTCATAGTCGAGAAGAGATTTCAGTTCATTTTCAGAAGACAAAAACTGATTGTAATCCGCTTACTACTACGCCTCAAATTTCCAACTATAAGTTTAAGTGTGGAATTTGTGACTACAAATGTGCACAGAAGAGTAATTTAGAAAGACATTTAAGAACGCATTCAGGAGATAAACCATTTCAGTGTGAAATTTGTGACTATAAATGTGGACGGAAGAGTAATTTACAAAGTCATTTAATAACGCATTCAGAAGATAAACCGTTTCAATGTGGAATTTGTGACTACAAATCTGCACGGAAGCAACATATAAAAATTCATTTAAAAACGCATTCAGGAGATAAATCGTTTCAGTGTGGAATTTGTGACTACAAATGTGCACAGAAGCAATATTTAAATGTTCATTTAAAAACCCATTTAGGTGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGGACGGAAGAGTAATTTAGAAAGTCATTTAAGAACGCATTCAGGAGATAAACCATTTCAGTGTGAACTTTGTAACTATAAATGTGGACAGAAGGGTAATTTAGAAAGTCATTTAAGAACGCATACAGGAGATAAACCATTTCAGTGTGAAATTTGTGACTATAAATGTGGACGGAAGAGTAATTTAGAAAGTCATTTAATAACGCATTCAGAAGATAAACCGTTTCAATGTGGAATTTGTGACTACAAATCTGCACGGAAGCAACATATAAAAATTCATTTAAAAACGCATTTAGGAGATAAACCGTTTCAGTGTGGAATTTGTGACTACAAATGTGCACACAAGAGTAATTTAGAAAGTCATTTTAGAACGCATTCAGGAGATAAACCATTTCAGTGTGAACTTTGTAACTATAAATGTGGGCGGAAGGGTACTTTAGAAAGTCATTTAAGAACGCATACAGGAGATAAACCATTTCAGTGTGAACTTTGTAACTATAAATGTGGACAGAAGGGTAATTTAGAAAGTCATTTAAGAACGCATACAGGAGATAAACCATTTCAGTGTGAAATTTGTGACTATAAATGTGGACGGAAGAGTAATTTACAAAGTCATTTAATAACGCATTCAGAAGATAAACCGTTTCAATGTGGAATTTGTGACTACAAATCTGCACGGAAGCAACATATAAAAATTCATTTAAAAACGCATTTAGGAGATAAACCGTTTCAGTGTGGAATTTGTGACTACAAATGTGCACACAAGAGTAATTTAGAAAGTCATTTTAGAACGCATTCAGGAGATAAACCATTTCAGTGTGAACTTTGTAACTATAAATGTGGGCGGAAGGGTACTTTAGAAAGTCATTTAAGAACGCATTCAGGAGATAAACCATTTCAGTGTGAAATTTGTGACTATAAATGTGGACGGAAGAGTAATTTACAAAGTCATTTAATAACGCATTCAGAAGATAAACCGTTTCAATGTGGAATTTGTGACTACAAATCTGCACGGAAGCAACATATAAAAATTCATTTAAAAACGCATTCAGGAGATAAATCGTTTCAGTGTGGAATTTGTGACTACAAATGTGCACAGAAGCAATATTTAAATGTTCATTTAAAAACCCATTTAGGTGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTGGACGGAAGAGTAATTTAGAAAGTCATTTAAGAACGCATTCAGGAGATAAACCATTTCAGTGTGAACTTTGTAACTATAAATGTGGACAGAAGGGTAATTTAGAAAGTCATTTAAGAACGCATACAGGAGATAAACCATTTCAGTGTGAAATTTGTGACTATAAATGTGGACGGAAGAGTAATTTACAAAGTCATTTAATAACGCATTCAGAAGATAAACCGTTTCAATGTGGAATTTGTGACTACAAATCTGCACGGAAGCAACATATAAAAATTCATTTAAAAACGCATTTAGGAGATAAACCGTTTCAGTGTGGAATTTGTGACTACAAATGTGCACACAAGAGTAATTTAGAAAGTCATTTTAGAACGCATTCAGGAGATAAACCATTTCAGTGTGAACTTTGTAACTATAAATGTGGGCGGAAGGGTACTTTAGAAAGTCATTTAAGAACGCATACAGGAGATAAACCATTTCAGTGTGAAATTTGTGACTATAAATGTGCAAGTAAACAAGGTTTAAAAAGTCATTTAATAACGCATTCAGAAGATAAACCGTTTCAATGTGGAATTTGTGACTACAAATCTGCACGGAAGCAACATATAAAATTTCATTTAAAAACGCATTTAGCAGATAAACCGTTTCAGTGTGGAATTTGTGACTACAAATGTGCACAGAAGAGTAATTTAGAAAGTCATTTAAGAACGCATTCAGGAGATAAACCATTTCAGTGTGAAATTTGTGACTATAAATGTGCACAGAAGGGACATTTAAAAATTCATTTAAGAACGCATTCAGGAGATAAACCATTTCAGTGTGAAATTTGTGACTATAAATGTGCACAGAAGGGACATTTAAAAATTCATTTAAGAACGCATTCAGGAGATAAACTGTTTCAGTGTGAACTTTGTAATTATAAATGTACACAGAAGGGTTCTTTAAAAAGTCATATGAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAATTTTGTGGCTTCAAATGTGCACATAGGAATAGTTTAAAAATTCATTTAAGAACGCATTCAGGAGTTAAACCGTTTCAGTGTGAACTTTGTAAGTATAAATGTGCACAGAAGAGTTCTTTACAAATTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTTCATATGTACACGGAAGGAAAATTTAAAAAGTCATTTAAGAACGCATTCAAAAGTTAAACCGTTTCAGTGTGCCATTTGTGATTTCAGATCTGCTCATAAGAGGAGTTTAAAGGGTCATGTAAAAATACATACCATCTCAAATTAG
Protein Sequence
MIALLQGTLSHTSRHSKIKSDKIELNLDELHHHPVHSREEISVHFQKTKTDCNPLTTTPQISNYKFKCGICDYKCAQKSNLERHLRTHSGDKPFQCEICDYKCGRKSNLQSHLITHSEDKPFQCGICDYKSARKQHIKIHLKTHSGDKSFQCGICDYKCAQKQYLNVHLKTHLGDKPFQCEICDYKCGRKSNLESHLRTHSGDKPFQCELCNYKCGQKGNLESHLRTHTGDKPFQCEICDYKCGRKSNLESHLITHSEDKPFQCGICDYKSARKQHIKIHLKTHLGDKPFQCGICDYKCAHKSNLESHFRTHSGDKPFQCELCNYKCGRKGTLESHLRTHTGDKPFQCELCNYKCGQKGNLESHLRTHTGDKPFQCEICDYKCGRKSNLQSHLITHSEDKPFQCGICDYKSARKQHIKIHLKTHLGDKPFQCGICDYKCAHKSNLESHFRTHSGDKPFQCELCNYKCGRKGTLESHLRTHSGDKPFQCEICDYKCGRKSNLQSHLITHSEDKPFQCGICDYKSARKQHIKIHLKTHSGDKSFQCGICDYKCAQKQYLNVHLKTHLGDKPFQCEICDYKCGRKSNLESHLRTHSGDKPFQCELCNYKCGQKGNLESHLRTHTGDKPFQCEICDYKCGRKSNLQSHLITHSEDKPFQCGICDYKSARKQHIKIHLKTHLGDKPFQCGICDYKCAHKSNLESHFRTHSGDKPFQCELCNYKCGRKGTLESHLRTHTGDKPFQCEICDYKCASKQGLKSHLITHSEDKPFQCGICDYKSARKQHIKFHLKTHLADKPFQCGICDYKCAQKSNLESHLRTHSGDKPFQCEICDYKCAQKGHLKIHLRTHSGDKPFQCEICDYKCAQKGHLKIHLRTHSGDKLFQCELCNYKCTQKGSLKSHMRTHSGDKPFQCEFCGFKCAHRNSLKIHLRTHSGVKPFQCELCKYKCAQKSSLQIHLRTHSGDKPFQCEICDFICTRKENLKSHLRTHSKVKPFQCAICDFRSAHKRSLKGHVKIHTISN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-