Rful009726.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996554.1:15388942-15392396[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 2.1e-05 0.0006 21.0 1.8 1 23 66 88 66 88 0.99
2 37 0.00015 0.0042 18.3 3.1 1 23 94 116 94 116 0.99
3 37 1.7e-06 4.8e-05 24.4 2.7 1 23 122 144 122 144 0.99
4 37 0.0002 0.0058 17.8 4.9 1 23 150 172 150 172 0.99
5 37 0.00012 0.0036 18.5 1.9 1 23 178 200 178 200 0.99
6 37 0.00012 0.0036 18.5 1.9 1 23 206 228 206 228 0.99
7 37 2.9e-05 0.00084 20.5 3.4 1 23 234 256 234 256 0.99
8 37 6.7e-05 0.0019 19.4 4.0 1 23 262 284 262 284 0.99
9 37 1.3e-05 0.00036 21.6 1.4 1 23 290 312 290 312 0.99
10 37 2.2e-05 0.00063 20.9 1.2 1 23 318 340 318 340 0.99
11 37 0.002 0.057 14.7 6.0 1 23 346 368 346 368 0.99
12 37 1.3e-05 0.00036 21.6 1.4 1 23 374 396 374 396 0.99
13 37 2.2e-05 0.00063 20.9 1.2 1 23 402 424 402 424 0.99
14 37 0.002 0.057 14.7 6.0 1 23 430 452 430 452 0.99
15 37 1.3e-05 0.00036 21.6 1.4 1 23 458 480 458 480 0.99
16 37 0.002 0.057 14.7 6.0 1 23 495 517 495 517 0.99
17 37 1.3e-05 0.00036 21.6 1.4 1 23 523 545 523 545 0.99
18 37 1.3e-05 0.00036 21.6 1.4 1 23 551 573 551 573 0.99
19 37 0.002 0.057 14.7 6.0 1 23 579 601 579 601 0.99
20 37 1.3e-05 0.00036 21.6 1.4 1 23 607 629 607 629 0.99
21 37 2.2e-05 0.00063 20.9 1.2 1 23 635 657 635 657 0.99
22 37 0.002 0.057 14.7 6.0 1 23 663 685 663 685 0.99
23 37 1.3e-05 0.00036 21.6 1.4 1 23 691 713 691 713 0.99
24 37 0.002 0.057 14.7 6.0 1 23 728 750 728 750 0.99
25 37 1.3e-05 0.00036 21.6 1.4 1 23 756 778 756 778 0.99
26 37 2.2e-05 0.00063 20.9 1.2 1 23 784 806 784 806 0.99
27 37 0.002 0.057 14.7 6.0 1 23 812 834 812 834 0.99
28 37 1.3e-05 0.00036 21.6 1.4 1 23 840 862 840 862 0.99
29 37 2.2e-05 0.00063 20.9 1.2 1 23 868 890 868 890 0.99
30 37 0.002 0.057 14.7 6.0 1 23 896 918 896 918 0.99
31 37 1.3e-05 0.00036 21.6 1.4 1 23 924 946 924 946 0.99
32 37 2.9e-05 0.00084 20.5 3.4 1 23 952 974 952 974 0.99
33 37 2.7e-05 0.00078 20.6 3.5 1 23 980 1002 980 1002 0.99
34 37 0.00034 0.0098 17.1 4.1 1 23 1008 1030 1008 1030 0.99
35 37 0.00098 0.028 15.7 6.9 1 23 1036 1058 1036 1058 0.99
36 37 2.4e-05 0.0007 20.8 2.1 1 23 1064 1086 1064 1086 0.98
37 37 0.0024 0.069 14.5 2.2 1 23 1092 1114 1092 1114 0.98

Sequence Information

Coding Sequence
ATGGTAGCTTTGTTACAGGGTACTACTCTATCACATTCAAATCGTCACTCCAAAATTAAGAGTGACGAAATAGAATTGAATTTGGATAAGTTACATCATCATCCCATTCATAGTCGAGAAGAGATTTCAGTTCATTTTCAGAAGACAAAATCTGATTGTAATCCGCTTACTACGACTCAAATTTGCAACTATAAGTTTAAGTGTGGAATTTGTGACTACAAATCTACAAGTAAAAGAAATTTAAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTTTCAGTGTGAAATTTGTAACTATAAATGTGCACAAAGGAATAGTTTAAAAATTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATTTGCACATAGGAGTAGTTTAAAAATTCATTTAAGAACACATTCAGGAGATAAACCGTATGAGTGTGAAATTTGTGACTATAAATGTGCACATAGGAGTAGTTTAAAATATCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAGTTTGTGACTATAAATGTACGGTTAAGGGTTCTTTAGAAAGTCATTTAAGAACGCATTCAGGCGATAAACCGTTTCAGTGTGAAGTTTGTGACTATAAATGTACGGTTAAGGGTTCTTTAGAAAGTCATTTAAGAACGCATTCAGGCGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTACACAGAAGGGAAGTTTAAAAATGCATTTAAGAACACATTCAGGAGTTAAACCGTATGAGTGTGAAATTTGTGACTATAAATGTGCACATAGGAGTAGTTTAAATAGTCATTTAAGAACGCATTCTGGAGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTATCAGTGTGGAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAAATATAAATGTGCACATAGGAATAGTTTAAATAGTCATTTAAGAACGCATTCTGGAGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTATCAGTGTGGAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAAATATAAATGTGCACATAGGAATAGTTTAAATAGTCATTTAAGAACGCATTCTGGAGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTATCAAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAAATATAAATGTGCACATAGGAATAGTTTAAATAGTCATTTAAGAACGCATTCTGGAGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAAATATAAATGTGCACATAGGAATAGTTTAAATAGTCATTTAAGAACGCATTCTGGAGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTATCAGTGTGGAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAAATATAAATGTGCACATAGGAATAGTTTAAATAGTCATTTAAGAACGCATTCTGGAGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTATCAAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAAATATAAATGTGCACATAGGAATAGTTTAAATAGTCATTTAAGAACGCATTCTGGAGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTATCAGTGTGGAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAAATATAAATGTGCACATAGGAATAGTTTAAATAGTCATTTAAGAACGCATTCTGGAGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTATCAGTGTGGAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTGAAATTTGTAAATATAAATGTGCACATAGGAATAGTTTAAATAGTCATTTAAGAACGCATTCTGGAGATAAACCGTATCAGTGTGAAATTTGTGACTACAAATCTACAAATAAAGGAAATTTTAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTTTCAGTGTGAAATTTGTGACTATAAATGTACACAGAAGGGAAGTTTAAAAATGCATTTAAGAACACATTCAGGAGTTAAACCGTATGAGTGTGAAATTTGTGACTATAAATGTGCACAGAAGGAACATTTAAAAGTTCATTTAAGAACGCATTCGGGCGATAAACCGTTTCAGTGTGAAATTTGTAAATATAAATGTGCACGTAGGAATAGTTTAAATAGTCATTTAAGAACGCATTCAGGAGATAAACCGTTTCAGTGTAAACTTTGTAACTATAAATGTGCACAGAAGGGACATTTAAAAAATCATTTAAAAACGCATTCAGGAGATAAACCGTTTCAGTGTGGAATTTGTGACTATAAATGTGCACAGAAGAGTAATTTAAAAAGTCATTTAAGAGCGCATTCAGGAGATAAACCATTTCAGTGTGGCATTTGTGATTTTAGATCTGCTCATAGGAGAAGTTTAAAGCGTCATGTAAAAATACATACCATCTCAAATTAG
Protein Sequence
MVALLQGTTLSHSNRHSKIKSDEIELNLDKLHHHPIHSREEISVHFQKTKSDCNPLTTTQICNYKFKCGICDYKSTSKRNLKVHLRTHSGDKPFQCEICNYKCAQRNSLKIHLRTHSGDKPFQCEICDYKFAHRSSLKIHLRTHSGDKPYECEICDYKCAHRSSLKYHLRTHSGDKPFQCEVCDYKCTVKGSLESHLRTHSGDKPFQCEVCDYKCTVKGSLESHLRTHSGDKPFQCEICDYKCTQKGSLKMHLRTHSGVKPYECEICDYKCAHRSSLNSHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPYQCGICDYKSTNKGNFKVHLRTHSGDKPFQCEICKYKCAHRNSLNSHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPYQCGICDYKSTNKGNFKVHLRTHSGDKPFQCEICKYKCAHRNSLNSHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPYQTHSGDKPFQCEICKYKCAHRNSLNSHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPFQCEICKYKCAHRNSLNSHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPYQCGICDYKSTNKGNFKVHLRTHSGDKPFQCEICKYKCAHRNSLNSHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPYQTHSGDKPFQCEICKYKCAHRNSLNSHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPYQCGICDYKSTNKGNFKVHLRTHSGDKPFQCEICKYKCAHRNSLNSHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPYQCGICDYKSTNKGNFKVHLRTHSGDKPFQCEICKYKCAHRNSLNSHLRTHSGDKPYQCEICDYKSTNKGNFKVHLRTHSGDKPFQCEICDYKCTQKGSLKMHLRTHSGVKPYECEICDYKCAQKEHLKVHLRTHSGDKPFQCEICKYKCARRNSLNSHLRTHSGDKPFQCKLCNYKCAQKGHLKNHLKTHSGDKPFQCGICDYKCAQKSNLKSHLRAHSGDKPFQCGICDFRSAHRRSLKRHVKIHTISN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-