Rful015366.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996557.1:25872105-25873615[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-07 0.00014 22.3 0.0 10 38 27 55 18 62 0.83
Sequence Information
- Coding Sequence
- ATGGCAAGAAATTACAAGCCTAAATTAGGGGGAAAACATTACAAACTAATTGACCCAAATATAATACAAATTGCAAAAAATTATGTTACAAATAATGGTTATAGCATAAGACAAGCCGCGATAAAACACAATGTTGCTTACACCGTGCTTCAGAGACATCTCAAAAATGTAAATATTAAAAAACAAGGAGTGGTTCAACAGTATTTAAATGGAGCTGGTAGGGTTGTTCCTCGTTTTCCAAATAACCTTCCAGATAAAGAATTTGCATATAGTTTTTTAAAACGCCATTCAAATATGTTACCTGAAAGAATGTGCCAAAATATAAAACGGGCCCGTGCTGGTGTTACTAGAGAAACTATTACACATTATTTTGAACATCTTTCTGTAGAATTAGAAGGTATTCCAGCTAGCAATATCGTGAATTATGACGAAACGAATCTTTCTGATGATCCGGGTCGAACAAAAATTATTACAAGGCGAGGATCTAAATATCCTGAACGGATTATTAATCATAGCAAATCATCAACTTCAATCATGTTTGCTGCTTCTGGTAGCGGCCAATTACTGCCATGCTATGTAGTCTACAAAGCTTTAAACATGTATGACTCTTGGACAACTGAAGGACCACCCCGTACAAAGTACAATCGTAGTAAATCGGGTTGGTTTGATAGTTATTGTTTCGAGGATTGGATGCATTCAGTCGCGGTAGCATATTTAAAGAAGCTGCCAGGCAAAAAGATATTAATAGGTGACAATTTATCTTCCCACCTTTCAGTACAATCAATAAAAGAGTGCTCAGAGAACAATATTAGTTTTATATTTTTACCAAGCAACTCAACACATTTGACGCAGCCTTTGGATGTAGCGTTTTTCAAGCCATTGAAAGTTGCATGGAGAAAGATAGTTGAATCTTATAAAAAGGGGCCAGGAAGAAAGGAGTGTAGCATTCCTAAAAATGTCTTTCCCGCTTTGTTAAAGAAACTGCTTGAATCTATTGATGATAACAGGGCGAACAATATAATTACTGGCTTTGATAAATGCGGAATATTGCCCATTAATGCTAATCGTGTGTTGAGTATGCTGCCTGTGGAAGATCCTGAAAATGAAGTTCACGAAAATGGGATCAACAACTCTATTGTTAACATTTTAAAATCTATGAGTGTGGACGTAGATGACTTGGAATCTTCCGATGAAAATAGCCAGCATCTTATTACTCATGATTCAAATTCCGATATGGATCCCATGTCTGACTATGAACCTGCTCCTGAAACTGAAGAGATTTCTCAGTCGTGGTCTATTGAGCCAATAATCACAAATAAATTTCCTGTGTTTCCTGTTGTTATAGAATAA
- Protein Sequence
- MARNYKPKLGGKHYKLIDPNIIQIAKNYVTNNGYSIRQAAIKHNVAYTVLQRHLKNVNIKKQGVVQQYLNGAGRVVPRFPNNLPDKEFAYSFLKRHSNMLPERMCQNIKRARAGVTRETITHYFEHLSVELEGIPASNIVNYDETNLSDDPGRTKIITRRGSKYPERIINHSKSSTSIMFAASGSGQLLPCYVVYKALNMYDSWTTEGPPRTKYNRSKSGWFDSYCFEDWMHSVAVAYLKKLPGKKILIGDNLSSHLSVQSIKECSENNISFIFLPSNSTHLTQPLDVAFFKPLKVAWRKIVESYKKGPGRKECSIPKNVFPALLKKLLESIDDNRANNIITGFDKCGILPINANRVLSMLPVEDPENEVHENGINNSIVNILKSMSVDVDDLESSDENSQHLITHDSNSDMDPMSDYEPAPETEEISQSWSIEPIITNKFPVFPVVIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -