Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996555.1:95100742-95102646[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3e-09 1.7e-06 28.5 0.0 2 38 16 52 15 55 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3e-09	1.7e-06	28.5	0.0	2	38	16	52	15	55	0.94

Sequence Information

Coding Sequence: ATGCCTTCGAAATACAAACGTATTTCAACTCGTCAGTCTTGGGATGAGCAGAATATGAAGAATGCAATACAAGAAGTGATAAACGTTCAAATGGGTTATAAAAAGGCAGCACAAACTTTTCATGTTCCACAAACCACTCTAGAGCGTCGAGTTCGTAAAGTGCGAGATGGAGCGATTGTTGATAATGCTGCAACCAAAGGACTTGGTAGGCTTAAGCCTGTTTTCAATGAAGATCAAGAAAATGAACTTGCTGAACACATTCTTGCAATGGAAGCGCGATTATTTGGTTTAAGCTTGAATGAATTACGCCATTTAGCATATAATTTGGCAGAAAGGAATAATTTGGCGCATAATTTCAATCGAGAGAAAGAAATGGCAGGGAAAACATGGTTGTATGGATTTTTAGGCAGACATCCGCAGTTAAAAATACGCACCCCAGAAGCAACATCCCTTGCTCGCACCATGGGATTCAATAAAGTGACTGTGGCAGCGTTTTTCAAACTTTTATCACATTTGTATGACAGATACAATTTTGCTCCAGAGTGCATATGGAACGTAGACGAGACAGGGATTACCACAGTTCCCAAGAAGATATCAAAAGTTCTAGGACTGCGTGGGAAACGGCAAGTAGGAGGATTAGTCTCTGCCGAGAGAGGAACTCTCGTAACCGTGGAAACATGCATGAGTGCAGCTGGAAATTTTATGCCCAGCATGTTTGTGTTCCCTAGAGTTAGAGCAAAAGCAGAACTTCTTGATGATACTCTACCTGGAAGCACTGCAGAATACCACCCTTCTGGCTGGATGCAGAAGGATATATTTTTCAAGTGGTTTCAAAGGTTCATAGAATTTACAAGACCCTCTAAAGATAGGCCTATTCTTTTATTGCTGGATGGTCACGCCACGCACACCAAAAACCTGGACCTTATCAACTTGGCTCGTGAAAACAATGTCATATTGCTGTGCTTTCCGCCACATTGCACACATAGGATGCAGCCATTAGATGTGTCATTTATGGCTCCTTTAAGTTACAATTATTCAGAAGAAGTACGCAAATGGTCTCGGTTACACCCTGGGCGACCGGTTTCAATTTATCAAGTTGGAAAGCTGTATAGTCAGGCATTTCAAAAGGCTGCTTGCGTTGATACAGCAGTCAATGGTTTTAGAAAAACGGGGATTTACCCACTCAATCCCGACGTCTTCGATGACTGGATGTTTAAGCCGGCTGAAACGACAGAGAGGCAACTAGTACACGTTACTGGTGACCATGATGATGACCATGACTTGGGACCCGATAATCAAGCATCTTTGATAAATGAACACTCTAACGTCTCAATTGGTGATACACCTGGAACGTCTGGCACCGCCCAAAGTATGAAAACACCACCTCCACCACAGAACGACCTTGTGCTTTCCGTGGAGTCAATGCAAGACAATAACCATTCGACAAGTTTTCTAGTGAGTCCAAGTGAAGTAATGAAACTGCCGCAAGTTGTAAAAAAGGATGGACCAAAACGGAATTGTCGAAAAGGAAAAACTGCTATTTTAACAGATAGTCCGTATAAAAATGAGTTAGCTCTACAATCCACTCCTCAGAGAAAAGTTGCAGAAAAGGTTTTTAAAAGAAAAATCCTATGCAAGAAAGCAACTGGACCTGAAAAAAGAAAAAAAGTTGTTGCTAAGCAAAGGCAGAGGACACCAAGTCCCGATTCATCAGAATCATCATATAGTGGAGACGATACTCCTTGCCTGATTTGTGGCGAAGCTTTTTCAAAATCAAAATCTGAGGAGGGATGGATAAAGTGCGACTCATGTCAGAAATGGTGTCATGAGGCCTGCGCTGATGTAGATCCAGAGGCTTGTGAAGCTTACGTTTGCGATTTTTGTTCTAAGACAATTTCTTTTTAA
Protein Sequence: MPSKYKRISTRQSWDEQNMKNAIQEVINVQMGYKKAAQTFHVPQTTLERRVRKVRDGAIVDNAATKGLGRLKPVFNEDQENELAEHILAMEARLFGLSLNELRHLAYNLAERNNLAHNFNREKEMAGKTWLYGFLGRHPQLKIRTPEATSLARTMGFNKVTVAAFFKLLSHLYDRYNFAPECIWNVDETGITTVPKKISKVLGLRGKRQVGGLVSAERGTLVTVETCMSAAGNFMPSMFVFPRVRAKAELLDDTLPGSTAEYHPSGWMQKDIFFKWFQRFIEFTRPSKDRPILLLLDGHATHTKNLDLINLARENNVILLCFPPHCTHRMQPLDVSFMAPLSYNYSEEVRKWSRLHPGRPVSIYQVGKLYSQAFQKAACVDTAVNGFRKTGIYPLNPDVFDDWMFKPAETTERQLVHVTGDHDDDHDLGPDNQASLINEHSNVSIGDTPGTSGTAQSMKTPPPPQNDLVLSVESMQDNNHSTSFLVSPSEVMKLPQVVKKDGPKRNCRKGKTAILTDSPYKNELALQSTPQRKVAEKVFKRKILCKKATGPEKRKKVVAKQRQRTPSPDSSESSYSGDDTPCLICGEAFSKSKSEEGWIKCDSCQKWCHEACADVDPEACEAYVCDFCSKTISF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01291458; iTF_01291459; iTF_01291460; iTF_01291461; iTF_01291462; iTF_01291463; iTF_01291464; iTF_01291465; iTF_01291450; iTF_01291451; iTF_01291452; iTF_01291453; iTF_01291454; iTF_01291455; iTF_01291456;
90% Identity: iTF_01291458; iTF_01291459; iTF_01291460; iTF_01291461; iTF_01291462; iTF_01291463; iTF_01291464; iTF_01291465; iTF_01291450; iTF_01291451; iTF_01291452; iTF_01291453; iTF_01291454; iTF_01291455; iTF_01291456;
80% Identity: iTF_01291458; iTF_01291459; iTF_01291460; iTF_01291461; iTF_01291462; iTF_01291463; iTF_01291464; iTF_01291465; iTF_01291450; iTF_01291451; iTF_01291452; iTF_01291453; iTF_01291454; iTF_01291455; iTF_01291456;