Rful004308.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996558.1:2846942-2848099[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-10 7.3e-08 32.9 0.1 3 37 16 50 14 52 0.93 2 2 6.9 3.9e+03 -1.5 0.0 1 12 185 196 185 198 0.86
Sequence Information
- Coding Sequence
- ATGCCAAGGAGTAAATCTGGACAAAAAAGAGCTCCAGTTAACACGGAAAATTTGATAATCGCAGCACGAAGATGTATCAGTGGAGAGATTTCCATGTGCCAAGCGGCTAGTCGATACAACATAGCAAAAACGACACTAACCAGGCACATAAGCGCGTTTAGGAAATCAGGAGCCGTTGAATTTAAATATACCGCAAGCAATAACACAAAGCAAGTGTTCTCGCAAGAAGAAGAAGAATCGTTAAAAAACTACCTTATAACAGCAACACGTCTTCACTACGGCCTCTCCAAAGCGGAGGCTCGAAGACTTGCCTATCAATTTGCGTTCGCCAATTCCCAAAAATACCCGGAATCCTGGATTACGGACAAAATCGCCGGAAAAGAATGGATGAGGCACTTTCTAAAACGTCACCCAGACTTGCTACTGCAAATGAGTACACCTGAAACTACGTTTTTAGACAACTTTAAAGAAGTCCTTGCTTCTGGTCATTTCCCACCAGAAAAAATATGGAACTGCGACGAAATGTGCCTTGTAAGTGCTGATGAGCATAACAAAAACACCACTATGATTGCGGCTGCAAGTGCGGTTGGAAATTGCATTCCACCAATGCTGATTTTTCCCAGGGCGACTTTTAGGCTTAACATGCTGAAAGGTTGCCCGGTTGGTTCGATTGGAGGTGCAAATCCATCGGGCTTATCAAACGCCGGTCTATTTTTACGCTTTTTAGCGCATTTTGTAAACCATGTTAAATCCGCCAAAGAAGATCCCGTTATACTAACTTTGGATAATTACGACGGCCATGTTAGCATCGAAGCAATTCGTTTTTGCCAGGAAAATGGGGTCATAATGTTGACTTTTGATCCTCGTGCGGTTGACAGTAAACAACCTTTGGATAATACCGTATTTGTGTCCATGAAATCTTACTATAGCAATGCTTACAGCGAGTGGATGCTCACGAATCCGGGCCAAACCATCACCATAAATGAAGTGGCCGAACTAATTGGAATTGCATTTCCAAAAGCTTTTACCCCTTCGAATATTAAAAAGGGTTTTGATGAAACTGAACTTTTTTCAGCTGATGAGAATATTTTGGAATATCCCAGTTCGAAATTCGAGGTCGATGATGCATTTGCAAGCACTTCTGAGGGAGCTTCGTAA
- Protein Sequence
- MPRSKSGQKRAPVNTENLIIAARRCISGEISMCQAASRYNIAKTTLTRHISAFRKSGAVEFKYTASNNTKQVFSQEEEESLKNYLITATRLHYGLSKAEARRLAYQFAFANSQKYPESWITDKIAGKEWMRHFLKRHPDLLLQMSTPETTFLDNFKEVLASGHFPPEKIWNCDEMCLVSADEHNKNTTMIAAASAVGNCIPPMLIFPRATFRLNMLKGCPVGSIGGANPSGLSNAGLFLRFLAHFVNHVKSAKEDPVILTLDNYDGHVSIEAIRFCQENGVIMLTFDPRAVDSKQPLDNTVFVSMKSYYSNAYSEWMLTNPGQTITINEVAELIGIAFPKAFTPSNIKKGFDETELFSADENILEYPSSKFEVDDAFASTSEGAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01293563;
- 90% Identity
- -
- 80% Identity
- -