Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.2e-13 6.7e-11 42.6 0.0 2 39 16 54 15 57 0.93

2 2 5.2 2.9e+03 -1.1 0.0 17 31 234 248 231 248 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.2e-13	6.7e-11	42.6	0.0	2	39	16	54	15	57	0.93
2	2	5.2	2.9e+03	-1.1	0.0	17	31	234	248	231	248	0.82

Coding Sequence: ATGTCTAGTAAATATGTAAGAAAAACTACACGTCAGTCATGGAGCAAGGAGAGCATGAGAGCGGCAATTACTGAGGTAATTGAAGGTAAAATGGGATATTTAAAAGCTTCTCGAAGATTTGGTATTCCCAAGTCAACTTTAGAGGACCGGGTAAAAAAAGCAAGAAGTGTAAATTCTGTTGATGAAGCTAGTCAGAAAGGTTTAGGACGATATAAACCGGTGTTTACTGCTGCCCAAGAAGATGAATTTGCCTCCTATATTTTAGAAATGGAGAGTGCTCTGGTCACAGTCGAAATTTGCATGAATGCAGCTGGTGGCTACATGCCAAACATGTTAATTTTTCCAAGAAAAAGAGCAAAACTTGAATTATTAGACGGTACTCCTCCAGGGACTGTTGCTGAGTTTCATCCTAGTGGGTGGATTCAAAAAGACCTTTTTATCAAATGGTTTAATCGATTTTTAGCTACAGCAAATCCGTCTGCCCAAAAACCAGTGCTTCTATTGTTAGACGGTCACGCGATACATACAAAAAGCATTGAATTGATCAACTTAGCACGTGAAAATAACGTAATCTTGTTAGGCTTTCCACCGCATTGTACTCACCGGATGCAGCCGTTTGATGTTTCTTTTATGGGTTCACTGAGCACTTACTATGGAAAAGAGGCAAGAGAATGGCTTCATGATCATCCTGGACGATGTATTACGATCAACCACATTGGAAAACTATTCGGAATTGCATTCACGAACGCAGCAAATGTTCAAGCAGCACTTGATGGTTTTAGGAAAACTGGAATATATCCACTCAATCCAGAAGTTTTTGAAGACTGGATGTTTGCTTCTTCAGAGCCTACTGAACTTTCCTGCAGAACGTGA
Protein Sequence: MSSKYVRKTTRQSWSKESMRAAITEVIEGKMGYLKASRRFGIPKSTLEDRVKKARSVNSVDEASQKGLGRYKPVFTAAQEDEFASYILEMESALVTVEICMNAAGGYMPNMLIFPRKRAKLELLDGTPPGTVAEFHPSGWIQKDLFIKWFNRFLATANPSAQKPVLLLLDGHAIHTKSIELINLARENNVILLGFPPHCTHRMQPFDVSFMGSLSTYYGKEAREWLHDHPGRCITINHIGKLFGIAFTNAANVQAALDGFRKTGIYPLNPEVFEDWMFASSEPTELSCRT

Sequence clustering based on sequence similarity using MMseqs2