Rmor007901.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- nfxl1
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:79010031-79025627[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.051 1.7e+03 1.0 0.9 1 5 138 142 138 147 0.89 2 12 0.0002 6.6 8.7 16.1 1 18 163 180 163 181 0.94 3 12 7.3e-11 2.4e-06 29.2 10.7 1 18 190 207 190 208 0.98 4 12 0.42 1.4e+04 -1.9 0.9 5 10 236 241 236 241 0.93 5 12 8.4e-05 2.8 9.9 6.0 9 19 256 266 254 266 0.90 6 12 0.022 7.5e+02 2.1 5.8 4 12 278 286 269 286 0.86 7 12 2 6.6e+04 -6.0 4.5 14 18 314 318 314 318 0.86 8 12 2 6.6e+04 -4.8 1.0 9 11 336 338 336 338 0.73 9 12 0.00085 28 6.7 6.3 1 11 355 365 349 366 0.81 10 12 2 6.6e+04 -4.2 2.6 5 10 382 387 380 387 0.80 11 12 1.2e-06 0.041 15.7 21.2 4 19 397 412 395 412 0.94 12 12 2 6.6e+04 -4.4 1.9 10 13 419 422 418 423 0.72
Sequence Information
- Coding Sequence
- atgaAGGTATCCACTTTAAATGATTGTGTGAATCTACAATCAGATCTTGATAACCTTACAAAGTGGTGTGAGAACAATGGCATGGAATTAAACGCAAATAAATGTCACTTTATGTTTTTTTCCCGATCTAGGAATAATCAGACTATTAACTTTGAATACAGGATTGATAATGTTACTCTAGAGAAGGTCTCCACCATCAAGGACCTAGGTGTCACTCTTGACTCTGAACTTAATTTTGTCCCTCACATTTCATCTTCTATCTCTAAAGCTCTCAGAATGCTTGGCTTTATAAAACGGATTTCGCAGGACTTCACCAACGTGGCCTCAGTCAAAGTTCTCTATTGCACGCTAGTGCGGCCACATCTTGAATATGCTTCCACGTGTCTAGAAACTGTGGAAAAGGCTTGTAGATGTGGCCAACATACGAAAGAAGTTCAGTGCTATAAACCATATTTTTGTGAAACcaaatgtaaaaacataaaagattgCAACAAACATCCCTGTAATAGAAAGTGCTGTGATGGAAATTGTACACCATGTGAAAAGCCGTGTGGGCGAACGTTACGTTGTGGAAATCATAAGTGCAACTCAATATGTCATAGCGGTCCCTGCTTTCCATGTATGTACAGTGACATTGTTTCTTGTAGATGTGGATTGACTAAAACAAGAGTGCCTTGTGGAAGCAAACATAAAACCAAACCtcctaaatgtaataaaatttgtttATTACCGCCTGATTGTCATCACGAAAGGAGAGAAACGCATAAATGCCACTTTGGTGAATGTCCTCCATGTCGACAAACATGTGGACAAGTGAGAATAACATGTCCACATCCGTGTACTGCACCATGCCATTCATCCGTTCTTGTGAAAATAGAAGGGCAAAAAGCATCTATGCCATGGGAACAGACAAAACCAAAAATTGAAAGAAGATCACTGCCATGTCCAGATTGCATTGTTCCAATGCCTGTTACTTGCTTTGGTGAACATGAAACTGCAAACTGGCCTTGCCATTTGGCGAAACCATCAAGTTGTTTTCGTTCATGCGGAAGATTATTAGAATGTCAAAATCACACATGTACTTTACCATGTCATGTAGTGGAGTCCGCTCCAGATAAAATAAAgGCAGGATCCAATTGTGAAAATTGTGACAGTGTCTGTGTCAAAGAAAGACCAAATGGATGTCCACACACATGCCCAAAACCTTGCCATCCAGGTCCATGCCCTCCATGTAAAAATATGCTACGTATAAAATGTCATTGCGGCCTTACACAACCCTATGTTAGCTGTAATGATTGGCTCAATCTAGGTAAAAGAGAAGAATTACAAAGTTGTGGTAACCAGTGTCCAAAAAATGTAAGCATTGTCTTAATGATTATATAA
- Protein Sequence
- MKVSTLNDCVNLQSDLDNLTKWCENNGMELNANKCHFMFFSRSRNNQTINFEYRIDNVTLEKVSTIKDLGVTLDSELNFVPHISSSISKALRMLGFIKRISQDFTNVASVKVLYCTLVRPHLEYASTCLETVEKACRCGQHTKEVQCYKPYFCETKCKNIKDCNKHPCNRKCCDGNCTPCEKPCGRTLRCGNHKCNSICHSGPCFPCMYSDIVSCRCGLTKTRVPCGSKHKTKPPKCNKICLLPPDCHHERRETHKCHFGECPPCRQTCGQVRITCPHPCTAPCHSSVLVKIEGQKASMPWEQTKPKIERRSLPCPDCIVPMPVTCFGEHETANWPCHLAKPSSCFRSCGRLLECQNHTCTLPCHVVESAPDKIKAGSNCENCDSVCVKERPNGCPHTCPKPCHPGPCPPCKNMLRIKCHCGLTQPYVSCNDWLNLGKREELQSCGNQCPKNVSIVLMII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -