Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796665.1:1170006-1179730[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.046 5.2 9.5 2.7 1 23 623 645 623 645 0.96

2 17 7 8e+02 2.6 6.1 1 23 838 860 838 860 0.97

3 17 0.13 15 8.1 3.1 2 23 866 887 865 887 0.97

4 17 0.0047 0.53 12.6 3.7 1 23 896 918 896 918 0.95

5 17 0.012 1.4 11.4 3.0 1 23 927 949 927 949 0.95

6 17 0.067 7.6 9.0 3.5 1 23 958 980 958 980 0.98

7 17 0.00045 0.052 15.8 1.0 1 23 989 1011 989 1011 0.97

8 17 0.47 53 6.3 1.6 1 23 1554 1576 1554 1576 0.98

9 17 0.16 18 7.8 1.9 1 23 1738 1760 1738 1760 0.97

10 17 0.0054 0.61 12.4 1.0 2 23 1956 1977 1955 1977 0.97

11 17 0.87 99 5.5 4.3 1 23 1986 2008 1986 2008 0.97

12 17 0.16 19 7.8 6.4 1 20 2017 2036 2017 2039 0.94

13 17 0.039 4.4 9.8 0.8 1 23 2048 2070 2048 2070 0.96

14 17 0.0028 0.32 13.4 0.3 1 23 2079 2101 2079 2101 0.97

15 17 0.00096 0.11 14.8 3.7 1 23 2110 2132 2110 2132 0.97

16 17 0.16 18 7.8 4.0 1 23 2141 2163 2141 2163 0.96

17 17 0.034 3.8 9.9 1.0 2 23 2173 2195 2172 2195 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.046	5.2	9.5	2.7	1	23	623	645	623	645	0.96
2	17	7	8e+02	2.6	6.1	1	23	838	860	838	860	0.97
3	17	0.13	15	8.1	3.1	2	23	866	887	865	887	0.97
4	17	0.0047	0.53	12.6	3.7	1	23	896	918	896	918	0.95
5	17	0.012	1.4	11.4	3.0	1	23	927	949	927	949	0.95
6	17	0.067	7.6	9.0	3.5	1	23	958	980	958	980	0.98
7	17	0.00045	0.052	15.8	1.0	1	23	989	1011	989	1011	0.97
8	17	0.47	53	6.3	1.6	1	23	1554	1576	1554	1576	0.98
9	17	0.16	18	7.8	1.9	1	23	1738	1760	1738	1760	0.97
10	17	0.0054	0.61	12.4	1.0	2	23	1956	1977	1955	1977	0.97
11	17	0.87	99	5.5	4.3	1	23	1986	2008	1986	2008	0.97
12	17	0.16	19	7.8	6.4	1	20	2017	2036	2017	2039	0.94
13	17	0.039	4.4	9.8	0.8	1	23	2048	2070	2048	2070	0.96
14	17	0.0028	0.32	13.4	0.3	1	23	2079	2101	2079	2101	0.97
15	17	0.00096	0.11	14.8	3.7	1	23	2110	2132	2110	2132	0.97
16	17	0.16	18	7.8	4.0	1	23	2141	2163	2141	2163	0.96
17	17	0.034	3.8	9.9	1.0	2	23	2173	2195	2172	2195	0.96

Sequence Information

Coding Sequence: ATGAGTAAATTTGTGTCTGAAAATGATAGAGATATCAATGATGTGAAGAATGAGGCAGATGTATTCGATGAAACTGTTGCAAATGGGGTTAAAACTGAGAACGAAGAGGTGCCGTGCCTAGAAAGTGATGATGTTTTTGACGAAGCTTTAGAAAGAAAAATAGAAATGGATTCACCTAGACGATACTCGTTCGATACTGTTAAATATCCAATCGATGATGATGTATTCTATGGTTGGGAGCAGCCGTGTCAcaaagatgtaaaaaataaatcgattccAATTGCAAAATGTTTAAACGAAGATGAAACCGACGATGTATTTGAAGAGGAGCAAGAAAAAAGTGtaggttttaatttcaccacAGGAATTAAACTAGAGATAGATGAGGATAACGATATATTATACGAAAATTTACAGAAAAGTGTTGATTTATTAGCGAACAATTTAAAACAAGAAAATGATAGTGAACAAGTCGAGGATCATTTGCCAATGTCAAATGTGAACATTAATAACGAAAGTTCTGTGGCAGATGAACAAAAGCAAGACGTAGTATCTGATATTGAACACAACAGAACAAGaattaatgAATATGGTTGTAGAACATGTGCTTTTTTAGCAGCACACAAGGTTATTCTTGAAAATCAGTCATTACAATTAGGAATCGAAGAGAACGCAGTGAACGAAAGATGTGTTgcaaatacaaacaataattttgatattactCGGCAGTTGGGTGTTGAAGGTACCAAAAAGGCAAATGTTAAGAAAGCAAACAAAAAATTAGaacaagatattaatttaaataaagaatgCGTAACTAATAGACAGAAGTTAAATATAGATGATAAGCAACAAAAAGAGATTGCTAAATCCGTAGAAATGAAAAGTAGCATGGAAAATATTCTTAGTAAAGAAACCAATTTAAATAAGATTGCACAATTACCACCAAAAACTATGTCAAACAGGATAGATACTTTAAAGGATGCTCAATCAGTACAGACGAAATTAGGAAATGGAGAAAATGGAGGACAGTTAATTGAAAAAGAAATACCCCAATTTGgggaaaaaaatatagaatgcGACAAAAATTCCGAAGAATCCTTCACAGAAATAAGACAAAATAACactcatttaaaaacaaaaattcaagaCCCTAAAATCTCCTTGGATATGAGCAAAATTGATAAGTTACTGGAGGAATGTgccaaaaatctttttcttaaGAGAAAGAGGAAGAAACGATTACTAAAACGTGGCATAAGCAGATCGATAAAACTTAACAACACATTGAAAGTATGTAAAAAAAACGCAAAcaatcaatttttcaaaaagatgAGATACCGAGAATGGAAGAGATATTTATTGAAACATGGTCTTAAAAATTCATACATCAGGTCATTTTttactaatgtaaacaaaaataaattctcaACAAGccaatttaaaagaatatcTGGTGAAAAAGAACCACAGGCAGAAGTAGCATTTCAAAACATTCAAACTGAAGGAGTATGTAGTGAAGAAcctgttaaaaaaattgtaagtaatGATGCTCGATTCATAGACGAAGTCAATTCGAAAATTAAGGCCAATGAGCGAAGCATAGATATACCTGATGTTTCCTTCGAGTTACCAGCTCTTGAATCtactaataacaataatattccAATAAGTAAAGAAGCACCtcaagtttttaataaagaaactgAGACTATACATCAAAACAAAGTGGCCTCGTTTACTGATCCAaaagaaaatgaagataaaGCTGTAAagaccaaaatttcatttaattccGTTCACTCTGTCATGAATCCTGTAGTAGAAACGCCAAGTCCTAAAACAATGCCAAGTAACAACATAGAATACTGCTGTACGGAATGCCCATTTAAGGTCAAAAATAGAACCAACTTTAAAATACACTTGATAGAGCACGGACCGAATTTTTCCAGCggtattatttcatttttagattTAGCTCGAAATAAGGCGCTGCCCAGAAATCAATTTGGAACAAGTAATAACCACACGCACGACGTAAATGAAAAAGTTGGAAAAACGAACGACCTATGCACGAGAGAAATACATAGTGGCATGCGTTCCGAGGAAGGAAAATCTGGAATTGAGGACAACGCTAATAAAAGTTTCCAGTCCTGTGAAAATGATGGGTGTATTGAGAGTGTCGATAACCAACAAAGTGAGATactaaatacagaaaataatacaattCGTGAACAAGCTGAGCCAATTGTGACGAATGATGATGCCATCTTGGAAAACTCAGAAAATCAATCTACAGAAGAGCAACAGGCACAGAGAGCAGAAACATTTCTCTGCGATAAAAACGatgcaaatattaaaaacgttGATACCAAATCTCAGAAAATGGAAAGGAATCCTCTTCAAATACTAACGCCAAATGGGGTAATACTAGAGTCAGGAGGCACGAAGAAAAGAAGAAGCAATACGGCGCCAAAGAGAATCAAATTGGAaattaaaaatggtaaaatCTATTGCTGCGATCAATGTTCTTATCAGTCGCATAATAAGAAGTACTTCAATAATCACATAATCATACATTCAAAAGATGTTATCAAGTGCGATCTTTGTGACTTCATCACAAACCATCACAGAAATATGAATAATCATATGTTGGTTCACTTGAAACCTGAAGAGATAAAAATGCACAAGTGTCCTTACTGCCCGTATCAAACAAAGAGACGCAGTGATCTGCACAACCACTTGGTACTGCATAAGAAACCTGAAGAGAGACGAATGTTCCAGTGTGACAAATGTCCGTATCAGTCCAAAAGAAAATGTAATCTTAGAGTCCATCAAGTGGGTCATAAATCTGACGACGATGCGCCCTTATTCAGTTGTGCCGTATGCTCATTTACCACAAAGAAAAAGTGCAGTCTTAAAACACATATGATAGTACACAAAAAGGTGGAGGAGACATGCTGGTATAAATGTGAACAGTGTCCTTACACTACCAAATACAAATCAGGGCTGAAAAGGCACGGCTTGGTCCATAAGGAGCGCgatgaaataaaaacttacGATTGCACTGTATGTCTTTACAGAGCAAAGTGTAAGAGCCATCTTAAGTCACATTTGTTGATACACAAAGATCCTAAAGAAGTGATGATACATAATTGTGACTATTGCTCTTATAAGGCCATTCAAAAAAATTCTGATACACATCGTGAGGCAAAATGCGTTTTACCTTTGACTGAATATAAGGTATTTAAGATGGTAAGCAAACGGGGTAGCCGTAAAATAGAACATGAAACGGATGATGTTTTTGATGAAACTCCTAATCACGGAATAAAAATTAAGAGAGAAAAGCAAGCGGAATATGAGGATGGTTTTGAAGAAACTTCGAtagtaaacttaaaaaataacttattgCAGTATGACGGTAATTGTTCTAACATCGGCAAAGTAACTGGCCAAGAATTATGTATTGACACTGGTACTTTAACTGATGAAGACCCAGACGATGTTTTTGAAGAGGAGCAAGAagcatctaaaaatataaattttgatgaTATCGCTAGAGGAATTAAGATAGAAGTAGATGAAGAAACTGACAGCTTATATAACGAAACTAATTTACACGAAAATTCAGATTATTTAACTGTTATAAAACAGGAAAATAACACTGAGGATTATGTTCATATTGCCGAAGATGCACTTCCTGAAAGTTTGCCTAATTTGTCAGCAAAATTCACCACTAACGGAGAAGCGTCTGTGGGCGATGGTGAACAAAGGATTGAAGAACTTAATATTAAACGTGAAGGGTCGAGgatTAACCCAAAATCAAAGTATCGTAAAAATTGTTCATTTAGTACAGAACAAAGGACTTTGAGAAGTAATCGGTTGCCACGTAAAGTGAAAAATTCAAGCAAATGCGGAAAAACTGTACATACACAAATGGGAAATGAAAATATTCCAGCAAATGAAACTGTTATTACAAATACAAACGATGTGGCTGAAAATGGTATTCATCCAGTCATTGAGGGCAGAAAAAACCAGTCACATTTAAACTCTTCAATTAAGAAAGGCAAATGTGTGACAAAGGAATCACGGAAACAGAAAGCggaaacaaataatgatataataaaatcaaatggGCACTTAATAGATGTAATTACAAAGGCctctattaaaaataatgcagGTGAGAAGAGATTAAATCCGAATAAAAAGCAACAACCAGTTGGAGATAATGAACAAAAAGGAAatacaaataaaagttgtgatCTAGAAAAAGACAAGCAAATTGAAATGGAAATGACTCCAACAGTAAATACAAATAGTTCTCTTGCTTTAATCAAACACGTCGCTACTATTGAGACCAAATCGAAAAGAGGAAATGAAGTGAAGGGACCGTTAAATAGGAAAAGCCGAACTAACTCCAACAAGATAATAAAAGGCAAAGAAAAAGTGAACCAGAGACAACTTGTGGGAAAAGATATTGATGAATCGGAAAGAATTCAGGGCTGTAGTAACCAAGTACTAAATGTGACGGAAACCAACGAAAATAGTAAGGTAATTGAGAAAGGCGCCCAGACTAAAACTAAACCTACAGAAGCTCATCAGTTTGCTGAGGAAATCGATGAAGGCGATACAAAACCTCACAGTCGACATATGGAATATGAGTGCACAAAATGTTCATTTAAAGCAAACCGTAAAGCCATCCTCAAGAGGCATTTATTAAAGCACGGCATAGAGTTTTCAAGTACTATCACATCGTTCTTAGACATTATAGAAAaagcaaaattatatacaagtcaattggaaaaaatatatgatGGGCAGGAACCCCAAAGACAAATCGTAACGAGGAATAACTGCATTGAAGCAGAAGAGGTATGCAATGGAACAACGTTGAGCAAAATTGTATTGGGAAGTGAGATGAACTCGAAACTGAATGACACAGAGGAGCCGATAGATGTTCTCAATGACGCCTTACAAGTACAAAATGTTACACTATCCAAAGCCCGAACCATGTCTCAGAATGACGATGCTTTTGTAATAAATCTAATGGACACAGTAGCACAAGGATCAACTTACATTAACCAAAACATAGAAGTCAAGTACGTTAATTTGGATAAAAACTGGTCATCTGAAAGTGAGATTGATCACGTCAAGGTTATTGATGTAGATAAACCGAAGTCTGAAACCAATCCAAGTATTAACGTAGAATATAGCTGTGCAAGATGCTTATTTAAGACGAAACGTAGAGCTACACTTAGGAGACATTTAGTTACGCATGGCACAGGATTATCCAGTGGAATTATTTCCTTTCTGGATTTAGTTAAAAACGACGGAGCACTCGCAAATCAGTTTGAAGAAGATGGTGAGGATAAAGAACAAATACAGCACGTAAGTGAAGACTTGGTGATTGAAAACAAGGTTGAGACCTTGGATGACGCagttttaaacgtaaattatGACGCAGAGTCTAAAGATAGGATAAAGTTGGAAAATGCAGATGTAAAGCTTTGTGAGATTACTGAGATTGTTGATAATGAAGTTCTCGACATTAGCTTAaacgaaaaaaatcaaataacgTTGCCTTTAAATGAAACCGAAATCACAACAAATGTAAATGTTAAATGTGAAAATACGGAAAATCTAATTAATGAAGGTTCATGTATCGAAACTTCGAATGGCAGAAAGTTGGCATTAAGAACACAGAAAAGAAAGAGGTGTGCAAGGAGATGGTCATTgcctaaaaagaaaaaaaagttggaaGGTCAAAGCCAGAAATTGTATTACTGCGATGAGTGTTCTTTTCAGTCGGATAAAAAGAAATACGTCGACAGTCACAAAATGGTCCATTCAAAAAATATTCTGAAATGTAATAATTGTGACTTTCTTACAAACCAACAGAGAAATTTGAACTCTCACATGCTGGTGCATTTGAAATCTGAAGAGATAAACCTACATAAATGCTCCCAATGCCCATATCAGTCGAAGAGAAAATGTGATGTGCGTTTGCACATGGTTATACACCAGACACCCGAGGAGATGAAATTGTTCCACTGTGACAAATGCCCTTACCAGTCCAAAAGAAAGAACAATCTTAAAAGGCACCAGATATGCCATATGTCTACTAATAGCTCATCTATGTTCAATTGTGCGGGATGCGCGTTTAAAACGAATCGTAGAACGGATCTTACGAAACATATGTTGCTCCATCGGAGACGGAACGAAACAGTTTGGTACACATGTCCGCAGTGCCCTTATGCTTCCATACACAATTCGGCATTAATGAAGCATAGCTTGGTCCATAAAGCACGCgatgaaataaaaacttacGATTGTCCCAAATGTCCGTACAAGGCAAAGCATAAATCTCATCTTAAAACCCATTTGATGATACACATGGATCCTGAAGAAGTGGAGATGCACCAATGCGAACATTGTTCTTATAAGTCATTGCGGAAGGCTAATTTGCGTGCTCATATACAGCAGCATAAAAATAGAGAAGAAATTAGTATGGTGAAGTGTGCGCAGTGCTCCTTTGCGACTAAATTAaagagtaatttgcttaaacaTATACAACGCACTCACAGGGGGTAG
Protein Sequence: MSKFVSENDRDINDVKNEADVFDETVANGVKTENEEVPCLESDDVFDEALERKIEMDSPRRYSFDTVKYPIDDDVFYGWEQPCHKDVKNKSIPIAKCLNEDETDDVFEEEQEKSVGFNFTTGIKLEIDEDNDILYENLQKSVDLLANNLKQENDSEQVEDHLPMSNVNINNESSVADEQKQDVVSDIEHNRTRINEYGCRTCAFLAAHKVILENQSLQLGIEENAVNERCVANTNNNFDITRQLGVEGTKKANVKKANKKLEQDINLNKECVTNRQKLNIDDKQQKEIAKSVEMKSSMENILSKETNLNKIAQLPPKTMSNRIDTLKDAQSVQTKLGNGENGGQLIEKEIPQFGEKNIECDKNSEESFTEIRQNNTHLKTKIQDPKISLDMSKIDKLLEECAKNLFLKRKRKKRLLKRGISRSIKLNNTLKVCKKNANNQFFKKMRYREWKRYLLKHGLKNSYIRSFFTNVNKNKFSTSQFKRISGEKEPQAEVAFQNIQTEGVCSEEPVKKIVSNDARFIDEVNSKIKANERSIDIPDVSFELPALESTNNNNIPISKEAPQVFNKETETIHQNKVASFTDPKENEDKAVKTKISFNSVHSVMNPVVETPSPKTMPSNNIEYCCTECPFKVKNRTNFKIHLIEHGPNFSSGIISFLDLARNKALPRNQFGTSNNHTHDVNEKVGKTNDLCTREIHSGMRSEEGKSGIEDNANKSFQSCENDGCIESVDNQQSEILNTENNTIREQAEPIVTNDDAILENSENQSTEEQQAQRAETFLCDKNDANIKNVDTKSQKMERNPLQILTPNGVILESGGTKKRRSNTAPKRIKLEIKNGKIYCCDQCSYQSHNKKYFNNHIIIHSKDVIKCDLCDFITNHHRNMNNHMLVHLKPEEIKMHKCPYCPYQTKRRSDLHNHLVLHKKPEERRMFQCDKCPYQSKRKCNLRVHQVGHKSDDDAPLFSCAVCSFTTKKKCSLKTHMIVHKKVEETCWYKCEQCPYTTKYKSGLKRHGLVHKERDEIKTYDCTVCLYRAKCKSHLKSHLLIHKDPKEVMIHNCDYCSYKAIQKNSDTHREAKCVLPLTEYKVFKMVSKRGSRKIEHETDDVFDETPNHGIKIKREKQAEYEDGFEETSIVNLKNNLLQYDGNCSNIGKVTGQELCIDTGTLTDEDPDDVFEEEQEASKNINFDDIARGIKIEVDEETDSLYNETNLHENSDYLTVIKQENNTEDYVHIAEDALPESLPNLSAKFTTNGEASVGDGEQRIEELNIKREGSRINPKSKYRKNCSFSTEQRTLRSNRLPRKVKNSSKCGKTVHTQMGNENIPANETVITNTNDVAENGIHPVIEGRKNQSHLNSSIKKGKCVTKESRKQKAETNNDIIKSNGHLIDVITKASIKNNAGEKRLNPNKKQQPVGDNEQKGNTNKSCDLEKDKQIEMEMTPTVNTNSSLALIKHVATIETKSKRGNEVKGPLNRKSRTNSNKIIKGKEKVNQRQLVGKDIDESERIQGCSNQVLNVTETNENSKVIEKGAQTKTKPTEAHQFAEEIDEGDTKPHSRHMEYECTKCSFKANRKAILKRHLLKHGIEFSSTITSFLDIIEKAKLYTSQLEKIYDGQEPQRQIVTRNNCIEAEEVCNGTTLSKIVLGSEMNSKLNDTEEPIDVLNDALQVQNVTLSKARTMSQNDDAFVINLMDTVAQGSTYINQNIEVKYVNLDKNWSSESEIDHVKVIDVDKPKSETNPSINVEYSCARCLFKTKRRATLRRHLVTHGTGLSSGIISFLDLVKNDGALANQFEEDGEDKEQIQHVSEDLVIENKVETLDDAVLNVNYDAESKDRIKLENADVKLCEITEIVDNEVLDISLNEKNQITLPLNETEITTNVNVKCENTENLINEGSCIETSNGRKLALRTQKRKRCARRWSLPKKKKKLEGQSQKLYYCDECSFQSDKKKYVDSHKMVHSKNILKCNNCDFLTNQQRNLNSHMLVHLKSEEINLHKCSQCPYQSKRKCDVRLHMVIHQTPEEMKLFHCDKCPYQSKRKNNLKRHQICHMSTNSSSMFNCAGCAFKTNRRTDLTKHMLLHRRRNETVWYTCPQCPYASIHNSALMKHSLVHKARDEIKTYDCPKCPYKAKHKSHLKTHLMIHMDPEEVEMHQCEHCSYKSLRKANLRAHIQQHKNREEISMVKCAQCSFATKLKSNLLKHIQRTHRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -