Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796663.1:1740131-1741747[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.9 2.2e+02 4.4 1.4 1 18 166 183 166 183 0.93

2 11 2.4 2.8e+02 4.1 1.1 1 23 195 218 195 218 0.92

3 11 2.6e-05 0.0029 19.8 1.2 1 23 227 249 227 249 0.98

4 11 0.001 0.11 14.8 3.9 1 23 258 280 258 280 0.99

5 11 0.011 1.2 11.5 0.9 1 23 289 311 289 311 0.98

6 11 0.0013 0.14 14.4 1.4 1 23 320 342 320 342 0.98

7 11 0.24 27 7.3 3.9 1 23 351 373 351 373 0.98

8 11 0.03 3.4 10.1 0.6 1 23 382 404 382 404 0.97

9 11 0.00081 0.092 15.0 2.6 1 23 413 435 413 435 0.99

10 11 0.011 1.2 11.5 2.3 1 23 444 467 444 467 0.95

11 11 0.033 3.8 10.0 2.4 1 23 476 499 476 499 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.9	2.2e+02	4.4	1.4	1	18	166	183	166	183	0.93
2	11	2.4	2.8e+02	4.1	1.1	1	23	195	218	195	218	0.92
3	11	2.6e-05	0.0029	19.8	1.2	1	23	227	249	227	249	0.98
4	11	0.001	0.11	14.8	3.9	1	23	258	280	258	280	0.99
5	11	0.011	1.2	11.5	0.9	1	23	289	311	289	311	0.98
6	11	0.0013	0.14	14.4	1.4	1	23	320	342	320	342	0.98
7	11	0.24	27	7.3	3.9	1	23	351	373	351	373	0.98
8	11	0.03	3.4	10.1	0.6	1	23	382	404	382	404	0.97
9	11	0.00081	0.092	15.0	2.6	1	23	413	435	413	435	0.99
10	11	0.011	1.2	11.5	2.3	1	23	444	467	444	467	0.95
11	11	0.033	3.8	10.0	2.4	1	23	476	499	476	499	0.96

Sequence Information

Coding Sequence: ATGAACCAGTGTGAGGTTAAATATAATGATGGAAGTTTAATGGAAGTGAAGGAACAGAAATGGAATGGTGTACAACAGTTTGTGTCAAATAATACATTGATCTGTAAAGAAGAGGGTATTGAAACTGACGCAGAAGGAACAATTTATATGGAGCAAGATATCAAGATTGAAcctaaatatgaaaattttgagGAGCTGAAAGACCCAGAATTTATTAACGTAAATGAAAGTTTAATTGCAGCGTCAGAGCTGGAGGatagaaaatgtttaattgTAGAAGATATCGAAATAAAAACGGAACAAAGCGATTTTGATAGttTACAAAGTGAGGACGCTTCGTCACGACCCGGAGACGGTATTCAATTGCACAGATGCTGTGGATCGCTTCCTGAACAACACCAATGCGAATCAAGTTTGATACAAACAAAATGTAAAAAGGATATCGAGGCAAAATGTGAAAGTGGTGTAAAAAATCCTTCAGAAAAAATACCAATTTACCAGTGCGAGTCTTGTGATTTAACCGCAAAATATAAAAGTGCCCtgtgtaaatgtaaaaaattaatccCCTCAGAAAAGAAAATGTTTCAGTGTGAGTCTTGTCCATATAAGACAAAATGGAGATGCGGGCTGCGAGAGCATATTAtattaatgcataaaaaacCGTCAGAAATAACAATATACCAGTGTGAGTCTtgtgattttaagacaaaacGTAAACAAAACTTGCAGGCGCATATGCTGATCCACAAAGAcccttcagaaataaaaatgtaccaGTGCGATTCGTGTGATTTTAAGACGAAACATAAATATTCCCTGACTGGGCATATGTTGACCCATAAAGACCCTTCAGAAATAACAATGTACTATTGCGAGTCTTGCACTTTTAAGGCAAAAAACCAAAAGGACCTGCTTAGCCATATGTTGATTCATAAATGCCCTtcggaaataaaaatgtacCAGTGTGCGTCTTGTTCATTTCAGACGAAACGTAAACAGAGCCTGGAAAGACATATGTTGGTCCATAAAGACCCTtcggaaataaaaatgtacCAGTGCGCGGCTTGTCCATTTAAGACGAAACATAATCGAAGCTTCCACGTACATATGTCGATCCACAAAGATCCgtcagaaatagaaatgttccAGTGTGCGTCTTGTGACTTTAAGTCAAAATATAAATGGAGCTTGAGTGAGCACATGGTGATCCACAAATCGTCCTCGGAAACAACAATGTACCAGTGTACTTCTTGCTCATTTCAGACAAAACGGAAACAAAGCTTGGAGAGACATATATTGACCCATAAAGATCCTTTAGAAGTAACAATGTACCATTGCGAGTCTTGTCCTTTTAAGACAATACGGAAACAGAGTCTGCAGAGGCATATTATGTTCATCCATAAAAGccttttagaaataacaatgTACCAGTGTGAGTTTTGTTCATTTAGGGGAAATCGTAAACATGAGCTGCTTGAGCATATGTCGTTGACCCATAAAAATCCTCTATAG
Protein Sequence: MNQCEVKYNDGSLMEVKEQKWNGVQQFVSNNTLICKEEGIETDAEGTIYMEQDIKIEPKYENFEELKDPEFINVNESLIAASELEDRKCLIVEDIEIKTEQSDFDSLQSEDASSRPGDGIQLHRCCGSLPEQHQCESSLIQTKCKKDIEAKCESGVKNPSEKIPIYQCESCDLTAKYKSALCKCKKLIPSEKKMFQCESCPYKTKWRCGLREHIILMHKKPSEITIYQCESCDFKTKRKQNLQAHMLIHKDPSEIKMYQCDSCDFKTKHKYSLTGHMLTHKDPSEITMYYCESCTFKAKNQKDLLSHMLIHKCPSEIKMYQCASCSFQTKRKQSLERHMLVHKDPSEIKMYQCAACPFKTKHNRSFHVHMSIHKDPSEIEMFQCASCDFKSKYKWSLSEHMVIHKSSSETTMYQCTSCSFQTKRKQSLERHILTHKDPLEVTMYHCESCPFKTIRKQSLQRHIMFIHKSLLEITMYQCEFCSFRGNRKHELLEHMSLTHKNPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -