Rmor046911.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:5219760-5224971[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.42 48 6.5 4.9 1 23 123 145 123 145 0.99
2 13 0.0015 0.17 14.2 1.8 1 23 154 176 154 177 0.96
3 13 0.031 3.5 10.1 1.9 1 23 186 208 186 208 0.98
4 13 0.00037 0.042 16.1 0.4 1 23 217 239 217 239 0.98
5 13 0.019 2.2 10.7 1.1 1 23 278 301 278 301 0.95
6 13 0.0094 1.1 11.7 2.6 1 23 561 583 561 583 0.99
7 13 0.013 1.4 11.3 4.9 1 23 592 614 592 614 0.99
8 13 0.07 7.9 9.0 0.2 2 23 624 644 623 644 0.97
9 13 0.00021 0.023 16.9 1.0 1 23 653 675 653 675 0.99
10 13 0.05 5.7 9.4 0.7 1 23 685 706 685 706 0.98
11 13 0.2 23 7.5 3.8 1 23 716 738 716 738 0.97
12 13 2.7e-05 0.0031 19.7 1.2 1 23 747 769 747 769 0.99
13 13 9.1 1e+03 2.3 0.2 1 16 778 793 778 795 0.87

Sequence Information

Coding Sequence
ATGAGTGGAAGTGGAGAAGATAAATACATTGAATTGGAGGGAACGGATGATGAAGGTCGAgtagaattaaaaaatgtacaacAGTTTACGCTCAGACCAATAATAAAATTGGAAAGTGAGTCATTCAGTATAAATGAATTAGAGGGGAGATGTGATCAAATTCAAGAAGACTATACCACGATGGatgaaactgaaattaaatgcaaAAAAGAAATAAGTGACACGGAACTGGTTATTAAGACAGAAGATGATATCAAATTTGAGCGAGTCGATTGTGATATCACTGATATCAATTCAGAACAGAGCGATTATgatggatttcaggaactctcctttgaaaataaaagtccaTCCGAGATAAAGGTGTTTCAATGTGAGTTCTGTTCATACCGGACAAAATGGAAAAGTTGCCTTacaacacatttattgacccacaaaagtccttccgaaatagagatgtttaaatgcgaaaTGTGCCCGTATGAGGCAAAACGTAAAATCTATCTTAGAGATCACTTAATGACCCATCATAAAAGCCCTTCCGAgctaaagatgtttaaatgcgagTTTTGTTCATACGAGTCAAAACTGAAGCGGCTGCTTAGAAAGcatttattgatccacaaaaatccgttggagataaaaatgtttaaatgtgaaatgtgcgCATACGAGTCAAAACGTAAAGGTAATCTTAACCTACACATGTTGGTTCATGAAGAcgtttcagaaataaaaatgtaccgGTGTCCTTGtcatttcaaaacaaaatataaaaggtGCCTGGACCGACATATGTTAACTCACAAAGACCCTGCAGAGGTAACAATGTACCAGTGTGAGTCTTGCCCATTTAAAACAGAATATAGCAGGAGCCTGCAACGACATATTACGTTAACTCACAAGGACCCTGCAGAAAATATAAATACATCAAAGGAAAATGTGGTGTGTACTGAATGTGCCAATTGCCTTCGAGTGTTCTCTAATTTCACACCAGGCCGTGCTTATACGGAACATGAGACGTTACCTTTATCTGATCTCGACAATGTTGTCAAGTTGGAACCAGAAGCCGTCGCAACTACAACTAATCTAAAGTCATTTATGAAGAcggaaataaaatgcagtttttgtacaaagGCTCACGGAAGAGAAGATCTCATATCGTTAATGGAATCAAAGGAAAATAAGTTTATGGTGGACATGCTGGAGCGATATATTTCGGAGATGaatTTAACAAACGCCGAAGAACTTTTAACCTGTGAAACTTGTCTTGAATCATTGGAAGGCGTTTTGAGCGTTATTATGAAGAGTCTGAaagtggaggagaagataaataaatatattgaattggagGGAACGGACGATAAAGGTCAAGTAGAGTTAAGGGAAGTACAGCAGTTTATGttcaaaccaattttaaaatcagAGATTGAGTCGTTTGGTGGAAATAAATTGGAAGATAGACCCGATCAAATTAAAGAAGAATATTCCATGATGGCTAAAGCCGAAATTAAACATGAAAGAGACATAAGTAACTTggagctgattattaagacgGAAGATGATATCAAATCCGATAAAAGCGATTGTGATATCCTCGATATCAAATCGGAGGAGAGTGATTGCAATGGatttcaggaactcttcattgaaaataaaagcccctccgagataaagatgtttcaaTGTGAGTTTTGTTCATACCGGACGAAATGGAAAAGTTCCCTTAcaagacatttattgactcataaagaTCCCTcggagataaaaatgtttaaatgtgacgTTTGTTCATACGAGGCGAAACAAAAATGCCACCTCACAAACcatttattaacccataaaagtccttccgagataaaaatgGTCAAATGTGAAGAGTGCCCATACGAGGGAAGACGTGAAAATCTTAGGTATCACTTATTGACTCATAAGATCCCTTCCGGTATaaacatgtttaaatgtgaaatctGTCCGTACGAGGCAAAACGTAAAATGTATCTTAGAAAACACTTACTAACCCATAGTAAACGTCCTGTTGAGGTAAAGATGtataaatgtgaaatgtgcaCGTATGAGGGAAAACGTGAAAATCTTAATCGGCACCTATTGGTCCATAAAAGCCCTTCTTCCATGCTAAATAGGTTTAAATGTGAGTTTTGTTTATACGAGACAAAACAGAAACACCTCCTTAAGCAACATTCGTTGATTCACAAAAGTCCGTCGGAGCTAGAAATGTTCAAATGTGACATGTGCCCGTATAAGTCGAAACGTAAAGCTAATCTTAAACTACACATATTGACCCATAGAAATCCTGCCGAGTTAAACATGTTTAAATGCGCAACGTGTCCATACGAGACGAAGCAACGACCAGCTTTGCACACCGGGATTACATTTCTACATCCTCATGTTTACTTCTCCCTAAGTAAGGTACCTCGTGTAAGTACAATTCGATCTAGTGCATGCGGATCGCCCGGGTATAGATCCTTGCGGTTATCCTCAAGTTGCGACGTGATTATTCTGGCTCCAACGCTTAAGACGAATGTACGCCCGTAA
Protein Sequence
MSGSGEDKYIELEGTDDEGRVELKNVQQFTLRPIIKLESESFSINELEGRCDQIQEDYTTMDETEIKCKKEISDTELVIKTEDDIKFERVDCDITDINSEQSDYDGFQELSFENKSPSEIKVFQCEFCSYRTKWKSCLTTHLLTHKSPSEIEMFKCEMCPYEAKRKIYLRDHLMTHHKSPSELKMFKCEFCSYESKLKRLLRKHLLIHKNPLEIKMFKCEMCAYESKRKGNLNLHMLVHEDVSEIKMYRCPCHFKTKYKRCLDRHMLTHKDPAEVTMYQCESCPFKTEYSRSLQRHITLTHKDPAENINTSKENVVCTECANCLRVFSNFTPGRAYTEHETLPLSDLDNVVKLEPEAVATTTNLKSFMKTEIKCSFCTKAHGREDLISLMESKENKFMVDMLERYISEMNLTNAEELLTCETCLESLEGVLSVIMKSLKVEEKINKYIELEGTDDKGQVELREVQQFMFKPILKSEIESFGGNKLEDRPDQIKEEYSMMAKAEIKHERDISNLELIIKTEDDIKSDKSDCDILDIKSEESDCNGFQELFIENKSPSEIKMFQCEFCSYRTKWKSSLTRHLLTHKDPSEIKMFKCDVCSYEAKQKCHLTNHLLTHKSPSEIKMVKCEECPYEGRRENLRYHLLTHKIPSGINMFKCEICPYEAKRKMYLRKHLLTHSKRPVEVKMYKCEMCTYEGKRENLNRHLLVHKSPSSMLNRFKCEFCLYETKQKHLLKQHSLIHKSPSELEMFKCDMCPYKSKRKANLKLHILTHRNPAELNMFKCATCPYETKQRPALHTGITFLHPHVYFSLSKVPRVSTIRSSACGSPGYRSLRLSSSCDVIILAPTLKTNVRP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-