Rmor046375.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:1398424-1403624[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0041 0.46 12.8 1.5 1 23 280 302 280 302 0.98
2 13 0.22 25 7.4 2.3 1 23 311 333 311 333 0.98
3 13 0.023 2.7 10.4 4.5 1 23 342 364 342 364 0.99
4 13 0.23 26 7.3 2.7 1 23 372 394 372 394 0.99
5 13 0.0012 0.14 14.5 2.4 1 23 403 425 403 425 0.95
6 13 0.0016 0.18 14.1 2.8 1 23 434 456 434 456 0.99
7 13 3.1 3.5e+02 3.8 1.1 1 23 465 487 465 487 0.95
8 13 0.0098 1.1 11.6 1.9 1 23 494 516 494 516 0.99
9 13 0.022 2.5 10.5 1.8 1 23 525 547 525 547 0.98
10 13 0.00021 0.024 16.9 1.4 1 23 556 578 556 578 0.98
11 13 0.0003 0.034 16.4 1.5 1 23 587 609 587 609 0.99
12 13 0.027 3.1 10.2 1.3 1 23 618 640 618 640 0.97
13 13 8.7e-05 0.0099 18.1 3.7 1 23 649 671 649 671 0.99

Sequence Information

Coding Sequence
ATGGGCAAACTCCAAACAATGATATGCAGGCTTTGTTTGCAGAAGTGCGTCGATTTTAAAGCTGTAGAAGACCACGTGAAAGATGTGTTGGAGGTACTTTTGCTGAAATTAGATCTAGCCGTTAGTGAAGACCCCGTCGTGTGTACAAAATGTGCGGcaatagtgatgaaaagtttTGACTTTAAAGCGACTTGTTTTTACACTTATGATTCTATAGTTCCGTTTCTCGATGAAGAGAAAATTTCGAAGCTGGATCTAAGAAAAGTCTTTACGAGCAATCACAACAATGTCCATATTCCTGATGATCACAGCGTATGCGGATTTTGCATGGGACTAGCCAAAAAGTGTGAGGCTTATTATTTAGATAATGAAGAGGGAGActttatgttgcagaaattggTTAAAAAATATCTTCCAGAATTGGATTTCAGTACCATCGAGGAACCAGTGATCTGTGCCTGCTGTTATGAATCGTTAAAGACCTATTTCCATTTCGTAACAAGCTGCTTAATTGTAGAAAAAAAGATAATGGACTGTCGTAAATTAACGGGCACAGACGTTATAGACGTTCTGCAGTTGGCATCCGGAAATGTATCGAAAGTAGAAGACGGTAATCCGATTGACATCATCTgcaaagaagaaaaattttgtgtCGAATCGGGAAACGCTGACGAACAGgaacccgtcaataaaaataaaactcctAACGATTCTCTACTTATGTCTGTGGTTACATCAGAGACAAGAAACTGCAAATGGGGTTCATACGAGATGAACCATAAAGTTAATCTTGGGCAAAACTTTTTGACCCACAAAACTCCTTCAGAGATAGAGATGTTTGAATGTGATTTGTGTTCATATAAAGGAAAACAGAAACGTTACCTAAAAgaccatttattgacccacaaaatttcttccgagataaagatgtttaaatgtgaattgtgttcatttgaaacaaaatataaacgaaGTCTTGATCAACATtcattgacccacaaaagtccttccgagatcaaaatgtttaaatgtgaaatgtgttcatatgagacaaaactGAGATGTAGCTTGAAGagacatttattaacccacaaaagtccttctgagatgatgtttaaatgtacattgtgttcatatgaggcaaaacagataCACCGTCTGACAACACACTTAttaacccataaaagtccttcagagataaagatgtttaaatgcgaattgtgttcatatgaaacCAAAACTAAAAGTGACCTTAAAAGACATTCATTCGTCCACAAGAGTTCTTcagagataaagatgtttaaatgtaaattgtgttcatataaAGGAAAACAGAAACGGTACCTAAGAGcccatttattgacccacaagagttcttccgagataaagatgtttaaatgtgaattgtgttcatttgaaacaaaatataaacgaGGTGTTAAACcacacttattgacccacaaaaatccttgtgagatgtttaaatgtgagttgtgttcatatgaaacaaaatataaacgaaGTCTTGATcagcatttattgacccacaaaggTCCTTCCAAAATCGaattgtttaaatgtgaaatgtgttcatatgagacacaACTGAAATATAAGTTGAAACGACATTTATTAatccacaaaagtccttctggGATAacgatgtttaaatgtgaattgtgctcATATGAGACAAACGATCAAAGTAACttcaaaaaacatttattgatccacaaaagtccttctgagataaagatgtttaaatgtgaattgtgctcATATGAGACAAAAGATCAAAGTAAcatcaaaaaacatttattgacccacaaaagtccttcagagatcgagatgtttaaatgtgaattgtgttcatttgaaacaaaatataaacgaGGTCTTAAACAACACTTATTggcccacaaaaatccttctgagatcaaaatgtttaaatgtaaaatgtgCCCATACAAGACAAAAAAGAAAGATACCCTCAAGagacacttattgacccatgaAACCTTTCTGAGGTATCGATATTCAAAAGTGAATTGA
Protein Sequence
MGKLQTMICRLCLQKCVDFKAVEDHVKDVLEVLLLKLDLAVSEDPVVCTKCAAIVMKSFDFKATCFYTYDSIVPFLDEEKISKLDLRKVFTSNHNNVHIPDDHSVCGFCMGLAKKCEAYYLDNEEGDFMLQKLVKKYLPELDFSTIEEPVICACCYESLKTYFHFVTSCLIVEKKIMDCRKLTGTDVIDVLQLASGNVSKVEDGNPIDIICKEEKFCVESGNADEQEPVNKNKTPNDSLLMSVVTSETRNCKWGSYEMNHKVNLGQNFLTHKTPSEIEMFECDLCSYKGKQKRYLKDHLLTHKISSEIKMFKCELCSFETKYKRSLDQHSLTHKSPSEIKMFKCEMCSYETKLRCSLKRHLLTHKSPSEMMFKCTLCSYEAKQIHRLTTHLLTHKSPSEIKMFKCELCSYETKTKSDLKRHSFVHKSSSEIKMFKCKLCSYKGKQKRYLRAHLLTHKSSSEIKMFKCELCSFETKYKRGVKPHLLTHKNPCEMFKCELCSYETKYKRSLDQHLLTHKGPSKIELFKCEMCSYETQLKYKLKRHLLIHKSPSGITMFKCELCSYETNDQSNFKKHLLIHKSPSEIKMFKCELCSYETKDQSNIKKHLLTHKSPSEIEMFKCELCSFETKYKRGLKQHLLAHKNPSEIKMFKCKMCPYKTKKKDTLKRHLLTHETFLRYRYSKVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-