Rmor046422.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796663.1:1659088-1661622[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.38 43 6.6 3.2 1 23 207 229 207 229 0.95 2 19 0.00033 0.037 16.3 2.9 1 23 238 260 238 260 0.98 3 19 0.024 2.7 10.4 4.4 1 23 269 292 269 292 0.97 4 19 0.0037 0.42 13.0 2.6 1 23 310 332 310 332 0.98 5 19 0.019 2.2 10.7 5.6 1 23 341 363 341 363 0.98 6 19 0.01 1.2 11.6 3.4 1 23 372 394 372 394 0.98 7 19 0.053 6.1 9.3 3.5 1 23 403 425 403 425 0.96 8 19 0.0011 0.12 14.7 0.9 1 23 434 456 434 456 0.98 9 19 0.0088 1 11.8 0.8 1 23 465 487 465 487 0.98 10 19 0.096 11 8.5 2.0 1 23 496 518 496 518 0.95 11 19 0.021 2.4 10.6 2.3 1 23 527 549 527 549 0.98 12 19 0.051 5.8 9.4 2.4 1 23 558 580 558 580 0.95 13 19 0.029 3.3 10.2 10.2 1 23 589 611 589 611 0.98 14 19 0.015 1.7 11.0 2.2 1 23 617 639 617 639 0.99 15 19 1.6 1.9e+02 4.6 7.3 1 23 648 670 648 670 0.98 16 19 2.2 2.6e+02 4.2 4.8 1 23 678 700 678 700 0.98 17 19 4.5 5.1e+02 3.3 4.1 1 23 705 727 705 727 0.97 18 19 0.0068 0.77 12.1 2.3 1 23 744 766 744 766 0.97 19 19 0.64 73 5.9 1.4 1 23 775 797 775 797 0.98
Sequence Information
- Coding Sequence
- ATGGAGAACAGAATATGCAGACTTTGTTTGGAAAGGTGCCAAACTTTCCAAGCTATGGAAGCTAATACGAAAGGTGTCTTGGATAAGCTCCAACTGAATGTTaaTCTAGCTGTAACTGAAGAGCCCGTGATGTGTGCAAACTGTGCGGAAATGCTCCAGAATAGTTTCGATTTTAAAACAGCAGAGCAACAGTTTACGTCAAATAACACATTGATCCGTAAAGAAAATGACATTAAAGTTGATATGATTAATACCGAAGGAACAATTTATGTGAAGACGGATATTAAGATTGaagatgaaaatgaaaattttggcGAACTGGAGGAGCAAAAACTAATTAACGTAAAGGGAAGTTTAATGGAAGTGCAGAATCAGAAATCGAATAGTGTACAGCAGAGTATGTTGGAATTCGAGGATAAACCATGTTTACTCGCAGACGTTATCGAAATAAAAACAGACCAAAACGATTTTAATAGtttaccAGATGAGAATGCTCCGCTACAACAACAGGATGTTAGTTTGGCTTTAACATACCAGTGTGAGTCATTTCCAACAAGACATACCCACCTCAATCAGGGGCATCCATCAAACTGTAATATATCCGCAGAAACAAAGCCGTACCTGTGCGATTCTTGCGATTTTAAGACAAAACATAAAAGTCGCCTGCTTAGTCATACGTTGGTCCATAAAAACTCTTCAGAAGTAACAATGTACCCATGCGAGTTTTGTGATCATaagacaaaatataaaagtagcCTGCGTAGTCATATGTTGGTCCATAAAGACCCTTCAAAATTAACGATACACCAATGCGATTCGTGTTCATTTCAGACAAATCGTAAACAAAATTTGAATCGACATAAAAGGTCGGCCCACAAAGACCCTTCAGAAATAGAAACGGTCCAGGATCCTTCAGAAACAATGATGTACAAGTGCGAGTCTTGTAATTTTAAGACGAAACGTAAAGATGGCCTGTTCAAGCATACGTTGATCCATAAAGACTCGTCAGAAGTAGAAATGCACCAGTGTGATTCTTGTTCGTTTCAGACTAAACGAAAATACACCTTGTATCGGCATATGTTGACCCACAAAGACCCTTCAGAAACACCAGTCTACCAGTGCAATTCTTGTGACTTTAAGACAAAACATAAACGTAGCCTGAGTGGGCATATGTTAGTCCACAAGGACCCTTCAGAAGTAGAAATGTACCTATGTGATTATTGTGATCATAagacgaaatataaaaatagcatGCTTAATCATTTGTTGACCCACAAAAACTCTTCAGAAATAGAATTGTATCAGTGTGATTCTTGCGATTTTAAGTCGAAATATAAAAGTGGCCTGCTTAATCACATGTTGGTCCACAGAGActctttaaaaatagaaatgtacCCGTGTGACTCTTGCGATTTTAAGACGAAATATAAAGGTAAACTGGACGTGCATATGTCGACCCACAGAAACCCTTCAGAGAAAATGAGGTACCTGTGCGAGTTCTGCTCGTACCAGACAAGATACAGTCGAAACTTTAATACGCATCTGTTGATCCATAAAGACCAGTCAGCATTAGAAATGTACCAGTGCGATTCTTGTGATTTTGAGACGAAATATAAGAATTACCTGCAGATACATAAATCCACCCACAAAGACCcttcagaaagaaaaatgttCCAGTGCGAGTCTTGTCCTTACATGGCGAAACATAAAAGTCACGTGCGTAAACATGCGGTGATCCACAAAGAACCTTCGGAAATAACAATACACCAGTGTAACTTTTGCTCGTTCAAGTCGAAACATAAACACAACCTGCGTAGGCATATATTGACCCACAACGACCTTTCCAAGTACCAGTGtgatttttgttcattttgcGCGAAAAATCAAGCAAAACTTGACAGTCACATGGCGACCCATAATCCCTCCACGGAAACAAAGATGTTTCACTGTCACTCTTGTTCGTTTCAGACGAATCATAAAGGTGGCGTTCAACGGCATATGTTGACCCACAAACTAGCTGAAACAACGATTTTCCAATGTCGTTTTTGTTCTTTTACCGCGCATTATAAAAAGGAGCTGCGTGAACATACGTTGACCCATGCAGGAGAAATGTACCGGTGTGACGTCTGCTCATATCAGACGAAATACAGTTTCAACCACGAAAGGCACAAGTTAGTCCATAAGGGGCCTGCGGAAATTAGCGGTTCTTGTTCGTATTCAGACACAGTGTACCAGTGCGATTCTTGTTCTTTTACGACAAAGTATAAATCTAGCCTGCAAAATCATGTGTTCATCCATAAAGGCCCTTCAGCAACGAAAACGTACCAGTGCGATTCTTGTCCGTTTCAGGCGAAATATAAACGGAGTATCCAGAAGCACAAGGCAACCCACAAGCTGCCCTAA
- Protein Sequence
- MENRICRLCLERCQTFQAMEANTKGVLDKLQLNVNLAVTEEPVMCANCAEMLQNSFDFKTAEQQFTSNNTLIRKENDIKVDMINTEGTIYVKTDIKIEDENENFGELEEQKLINVKGSLMEVQNQKSNSVQQSMLEFEDKPCLLADVIEIKTDQNDFNSLPDENAPLQQQDVSLALTYQCESFPTRHTHLNQGHPSNCNISAETKPYLCDSCDFKTKHKSRLLSHTLVHKNSSEVTMYPCEFCDHKTKYKSSLRSHMLVHKDPSKLTIHQCDSCSFQTNRKQNLNRHKRSAHKDPSEIETVQDPSETMMYKCESCNFKTKRKDGLFKHTLIHKDSSEVEMHQCDSCSFQTKRKYTLYRHMLTHKDPSETPVYQCNSCDFKTKHKRSLSGHMLVHKDPSEVEMYLCDYCDHKTKYKNSMLNHLLTHKNSSEIELYQCDSCDFKSKYKSGLLNHMLVHRDSLKIEMYPCDSCDFKTKYKGKLDVHMSTHRNPSEKMRYLCEFCSYQTRYSRNFNTHLLIHKDQSALEMYQCDSCDFETKYKNYLQIHKSTHKDPSERKMFQCESCPYMAKHKSHVRKHAVIHKEPSEITIHQCNFCSFKSKHKHNLRRHILTHNDLSKYQCDFCSFCAKNQAKLDSHMATHNPSTETKMFHCHSCSFQTNHKGGVQRHMLTHKLAETTIFQCRFCSFTAHYKKELREHTLTHAGEMYRCDVCSYQTKYSFNHERHKLVHKGPAEISGSCSYSDTVYQCDSCSFTTKYKSSLQNHVFIHKGPSATKTYQCDSCPFQAKYKRSIQKHKATHKLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -