Rmor046509.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796663.1:2103303-2114565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.68 77 5.8 0.8 1 20 250 269 250 269 0.96 2 20 0.071 8 8.9 3.6 1 23 299 321 299 321 0.97 3 20 0.42 48 6.5 0.1 1 23 330 352 330 352 0.97 4 20 1.6 1.8e+02 4.7 6.8 1 23 361 384 361 384 0.97 5 20 0.017 1.9 10.9 3.2 1 23 392 414 392 414 0.99 6 20 0.013 1.4 11.3 1.1 1 23 453 475 453 475 0.98 7 20 0.0044 0.5 12.7 4.8 1 23 484 506 484 506 0.98 8 20 0.0069 0.79 12.1 0.9 2 23 516 538 515 538 0.95 9 20 0.014 1.6 11.2 3.3 1 23 547 569 547 569 0.97 10 20 0.039 4.4 9.7 0.8 1 23 578 601 578 601 0.96 11 20 0.043 4.9 9.6 6.3 1 23 902 925 902 925 0.96 12 20 1.5 1.8e+02 4.7 4.2 1 23 933 955 933 955 0.98 13 20 0.029 3.3 10.1 0.5 1 23 994 1016 994 1016 0.98 14 20 0.0005 0.057 15.7 1.2 1 23 1025 1047 1025 1047 0.98 15 20 0.02 2.3 10.6 1.5 2 23 1057 1078 1056 1078 0.96 16 20 0.014 1.6 11.2 3.8 1 23 1087 1109 1087 1109 0.97 17 20 0.25 29 7.2 3.9 1 23 1118 1141 1118 1141 0.96 18 20 0.0024 0.27 13.6 1.0 1 23 1151 1173 1151 1173 0.97 19 20 0.019 2.1 10.7 2.6 1 20 1190 1209 1190 1212 0.92 20 20 4.6 5.2e+02 3.2 10.8 3 23 1219 1240 1217 1241 0.96
Sequence Information
- Coding Sequence
- ATGCTGAATACCCGGCATAACAACTTTGGCATTTCAGATGGACCAAGCGAAAAAGTTTCTAAGAATACCACCTGTTCCATTGAGAAAGAAACAGAAGCCGATGATTTAGGaggtataaaaattgaaattaaagagGAGCCTATTATTGATAGCGAAGCTGGTACATGTCTAGATACCCCAAAATTCGATTGTCAAGAATATAAttctaatttttgtaaaaatgacaACCATAACGCTGCCCAAGACCTAGCTGTagaatttattgataaaaatttttCGATGTTGGAAGGTATAAATCAACATGGTGGTAAAGCCGGTAGCGACAAACGTGTATTCAACGTTGAAGACTTGACCGATATATCGACCATGATCGAAGTTGATGATATCTTTGTTGATGAAGGCCACAGAAGCGAAAATATTGAtggtaaatcaaataaaatagaaaCTCCCGAAGAACGAACGTTTACTTCAAATAGAAAGCATGACAATGGTGCGTTAATTTTACATCAAATTGACGATAAAATTTTATGCAGTAATGTCAAATTAGATAAGGATGATATAAAAGATTCGATTTCGTCTCCAGAACTTgcagttaaaaatataaaagttaaatattttgatgaaaaagtTTATTACAAATTGCTTGACAGTCCTGAAGAATTAACTGTGAATTTGGAACGTGTGAACCTACTTAAGTTACAAAAATCATATGGACGCGTAAAGAGTAGGTCTCGACGAAGAATTCACTTTAACTGCAAATCGTGTTCATATAGAGCAAAGCGTAAATTTGATCTAATAACGCATATATGGGAGAATCacaaaaattttgccgccgAGAAAAAAATCCCACCTCTTGACAATATTTTTCCCGGACAACAGCCTAGTTCTATTTGGTATAAGTGCACAGATTGTACGTATGTGTCAAAAAAGAGAATCTATTTCGAGAGACACACTTTCTCACACAAGCAGTTACATGAAGTGGAGACTTTTAGCTGTGCCTTATGCCCTTTTATAACGAGAATAAAGCAGAATCTTATAGTTCATGTGAATCTTCATATGGAGCAGTCAGAGGCTAAAATCCATAAGTGCTCTTACTGTAACTTCAGTTCCTACTATAAATATACTGTAGAGCACCACGTCAAACGTTTACATAAAAGAGACGAGGCTGAAATATTTCAGTGCAAGAAATGTTCATTTCAGACTGTTTACAGATATGCTCTGAAATACCATCAACGTATTCATAGCAAGTCGAGACAATTATACAAATGTCCGTTGTGTCCGTTCCAAACTGTATGTGCTAGAGTTCTTAGAACAAGTCATGCTTTATTGCACAAGAGTGATGCCGAGACGAGGGTCTTTGTCTGCGCCCATTGCTCATTTAAGGCGAAAACTAAATCCGGGTTGATAACACACCAACTGATTCACAAACGTCCAGATGAGGTGGTAATGTTTAAATGTGGCGAGTGCCCTTACCAGACCAAACGTCGCTATTGTTTGCGAAAACACCGACAAGTACACAAGGCTCCCGAGGAATTTGATATGATTCCGTGTGATTTTTGCCCCTAtaagGGCAGAACAAAAGACCATATGAAAGCACACATTAGAAATTCTCATCTGAGCCCTGATAAGATTACTATATACAAGTGCAAGGACTGCCCGTATCAGAGTAAATTTTCTTCGACTTTTAAACGGCATAGTTCGATCCACAAGAGAGATGCAGGCATAACTTTCCACTACTGTGACGGGTGTAAATTTAAAGGAAAAACCGAGGAAGAGTTAAAGGCACATGTTAACCGAGCGCATCCTCCCAAGGGGCCCAAGTTGTACAAGTGTGATCAATGTGGCTTTCAGTTGACAGCAATTTCAGTTATAATAGTAAAGATTAATGCTGAATACCCACTCGGCCTGATAACAACAACTTTGGCATATCAGATGGGCCAAGTGAAGATGTTTTTGGGAACACCACCTGCAAATATTGAGGAAGAAATTGAAGCCGATGATTTAGGTGATATAAAAATAGAAGTTAAAGAGGAGTCTATTGATGATAGCGAGGCTGGCATATGTGTGGATACCTCAGAATGTGATGCCCTTCCATTCGATTATCAAGAATATAATTCTGTAGCTGTAGAATttgttgttaaaaatttatCGATTTTGGAAGGTTTGAATCAACATGGTGGTGAAGCCATTAGCGAAGATGATATCTTTGTCGATGAAGGCTACAGGAGGGAAAATATTGGCGAAGGGTTGAACAAAATGGGAACTCCTGAAGAACGTACCTTTACTTCAAATAGGAAGCATGGCGATGGGGCGTTAATTTTACATCAAATTGACGATAAAATATTACGCAGTGATGACAAATTAGAAGGCGTAATAAAGAAGGAGGATATTAAAGATTGGATTTCGTCTCCTGAACACTTGATGATACCCAATTGGGAAGAAGAGTCCAAAGAAAAGATCTTGAAGGATTGCAATATGTATTTGAGGAAGGCTAGCGAGTGTGAGGAAAAAGTTTTCTGCAAATTATTTGGCACTCCGGAACTACGTGTGAATCTGGAACGTGTCAACCTGCATAAACTTCAAAAATTGTGTGAGAAAAATGGATACGTAGAAAGCTGTGCTTCATGCCCTTTTATATCGAAAATAAAGCAAAATCCTATGGAACACGTGAATCTGCATAGGGAGCAGTCGGAGACTAAAATCCATAAGTGCTCTTATTGTAACTTTAGTTCCTACTATAAATCTTATATGAAGAGGCACATCAAGTATTTACATAAGAAGGACGAGGCTGAAATATTTCAAtgcaaggaatgttcatttcaGaCTGTTTACGGATGTACCCTGAAATACCATCAACGTATTCATAGCAGGTCGAGACAATTATACAAATGTCCTTTGTGTCCGTTCCAAACTGCATATCCTAGAGTTCTTAGAACAAGTCACGCTTTATTGCACAAGAGTGATGCCGAGACGAGGGTCTTTAGCTGTGCCGGTTGCTCATTTAAGGCGAAAACTAAAGAAAACATGGTAAGACACCAGCTGGTTCACAGACGTCCAGATGAGGTagtaatgtttaaatgtgacgAGTGCCCTTACCAGACCAAACACAGAGGCGGTTTGCAAAGACACGTACAAGTTCACAAGGCTCCCGATGAACTTAATATGATTCCGTGTGATTTTTGCCCGTATAAgGGAAGAACAAAAGACCATATTAGACAGCACATGAAAAATCATCTAAGCCCTGATAAGATCACTATATTCAAGTGCAAGGAGTGCTCGTACCAGAGTAAACATCCTTCGACTTTTAAACGGCACGGTTTGATCCACATGAAAGTCGAAGACATAACTTTCTACTGCTGCGGCAGGTGTAAATTTAAAGGGAAAACTAAGGATTCGTTAAAAACGCATGTTAATCGAGTGCACGATGCAGCGCCCAAGGAACCCAAGCGGTTCAAGTGTGATCAATGTGGCTTTCAGTTCAACAAGATATTCGCTCTAAACAGGCACCTTGAATTGCACAGGTACTCCGGAGAGATGGCACCCGAAGCCCCTCTTAAAGCAAATATGTTCTATTGCCACAATTGCCTGTATTCCACAAAAAGTAAAGCTGACCTGAAAACTCACATGCCGATGCATTCAAATATTTTCAAGCATTGTACATTGTGTGAATTTAAAACTAGGTATCGTTCCTGTTTTACTCGCCACATGAAGACTCGTCATCATTTATAA
- Protein Sequence
- MLNTRHNNFGISDGPSEKVSKNTTCSIEKETEADDLGGIKIEIKEEPIIDSEAGTCLDTPKFDCQEYNSNFCKNDNHNAAQDLAVEFIDKNFSMLEGINQHGGKAGSDKRVFNVEDLTDISTMIEVDDIFVDEGHRSENIDGKSNKIETPEERTFTSNRKHDNGALILHQIDDKILCSNVKLDKDDIKDSISSPELAVKNIKVKYFDEKVYYKLLDSPEELTVNLERVNLLKLQKSYGRVKSRSRRRIHFNCKSCSYRAKRKFDLITHIWENHKNFAAEKKIPPLDNIFPGQQPSSIWYKCTDCTYVSKKRIYFERHTFSHKQLHEVETFSCALCPFITRIKQNLIVHVNLHMEQSEAKIHKCSYCNFSSYYKYTVEHHVKRLHKRDEAEIFQCKKCSFQTVYRYALKYHQRIHSKSRQLYKCPLCPFQTVCARVLRTSHALLHKSDAETRVFVCAHCSFKAKTKSGLITHQLIHKRPDEVVMFKCGECPYQTKRRYCLRKHRQVHKAPEEFDMIPCDFCPYKGRTKDHMKAHIRNSHLSPDKITIYKCKDCPYQSKFSSTFKRHSSIHKRDAGITFHYCDGCKFKGKTEEELKAHVNRAHPPKGPKLYKCDQCGFQLTAISVIIVKINAEYPLGLITTTLAYQMGQVKMFLGTPPANIEEEIEADDLGDIKIEVKEESIDDSEAGICVDTSECDALPFDYQEYNSVAVEFVVKNLSILEGLNQHGGEAISEDDIFVDEGYRRENIGEGLNKMGTPEERTFTSNRKHGDGALILHQIDDKILRSDDKLEGVIKKEDIKDWISSPEHLMIPNWEEESKEKILKDCNMYLRKASECEEKVFCKLFGTPELRVNLERVNLHKLQKLCEKNGYVESCASCPFISKIKQNPMEHVNLHREQSETKIHKCSYCNFSSYYKSYMKRHIKYLHKKDEAEIFQCKECSFQTVYGCTLKYHQRIHSRSRQLYKCPLCPFQTAYPRVLRTSHALLHKSDAETRVFSCAGCSFKAKTKENMVRHQLVHRRPDEVVMFKCDECPYQTKHRGGLQRHVQVHKAPDELNMIPCDFCPYKGRTKDHIRQHMKNHLSPDKITIFKCKECSYQSKHPSTFKRHGLIHMKVEDITFYCCGRCKFKGKTKDSLKTHVNRVHDAAPKEPKRFKCDQCGFQFNKIFALNRHLELHRYSGEMAPEAPLKANMFYCHNCLYSTKSKADLKTHMPMHSNIFKHCTLCEFKTRYRSCFTRHMKTRHHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -