Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796663.1:4457339-4460049[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00024 0.027 16.7 2.3 1 23 275 297 275 297 0.97

2 12 0.18 20 7.7 6.0 1 23 306 328 306 328 0.96

3 12 0.1 11 8.5 0.6 1 23 337 359 337 359 0.98

4 12 0.00058 0.066 15.5 1.3 1 23 368 390 368 390 0.97

5 12 0.0036 0.42 13.0 4.0 1 23 399 421 399 421 0.97

6 12 0.00093 0.11 14.9 2.5 1 23 427 449 427 449 0.98

7 12 0.059 6.7 9.2 1.5 1 23 458 480 458 480 0.97

8 12 7.3e-05 0.0083 18.3 0.5 1 23 489 511 489 511 0.98

9 12 0.0054 0.62 12.4 0.5 1 23 520 542 520 542 0.98

10 12 0.039 4.5 9.7 1.5 1 23 551 573 551 573 0.98

11 12 0.013 1.4 11.3 3.3 1 23 582 604 582 604 0.98

12 12 7.7e-05 0.0088 18.2 1.1 1 23 613 635 613 635 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00024	0.027	16.7	2.3	1	23	275	297	275	297	0.97
2	12	0.18	20	7.7	6.0	1	23	306	328	306	328	0.96
3	12	0.1	11	8.5	0.6	1	23	337	359	337	359	0.98
4	12	0.00058	0.066	15.5	1.3	1	23	368	390	368	390	0.97
5	12	0.0036	0.42	13.0	4.0	1	23	399	421	399	421	0.97
6	12	0.00093	0.11	14.9	2.5	1	23	427	449	427	449	0.98
7	12	0.059	6.7	9.2	1.5	1	23	458	480	458	480	0.97
8	12	7.3e-05	0.0083	18.3	0.5	1	23	489	511	489	511	0.98
9	12	0.0054	0.62	12.4	0.5	1	23	520	542	520	542	0.98
10	12	0.039	4.5	9.7	1.5	1	23	551	573	551	573	0.98
11	12	0.013	1.4	11.3	3.3	1	23	582	604	582	604	0.98
12	12	7.7e-05	0.0088	18.2	1.1	1	23	613	635	613	635	0.99

Sequence Information

Coding Sequence: ATGAACGACAAAAACAGAAATAAATGTAGACTCTGCCTTAAAGCAATATACGACAATAATTTTGACTCCATAGGGGCAATAACGATACAAATGTTGGAAATGCTTCTTCTGAATCTTaATTTGGATACGAGTGCGTCACATGTGATGTGTCCTGATTGTGCTACACGCCTCCAGAAATCCTTTGATTTCAAAGCAGCATGTATTTGTGTAAAGGACAAGTTATCACCAGTTGTCAGTCTTAGAGAAAATATTAAATCGGAAAATGAAATTATAACTGAAGGTCAGATGTGCCGATTTTGCATGAAACTGACAGAAAGCGGCTGCTTTTCATATCTGTGGGAATCAAAGAAAAACATGTTCCTGGTAGATATGCTGCAAAAGCATTTCCCCGAACTGaatataaataCCACCAAAGAGCTCGTAACTTGTGACACATGCAACGGGTCATTGCAAAATATGCTTAGTTTTATAAGAAACTGTTTGGATGCGGAAGATAGAATTAATGAAACACTTCGAACAGAAGAAATCGATGACAAAGGTCAAATACGGTTGGAAAGTattcaacaatttatttttaaaccggTGTTAAACGATTCTGATACCTGCAACACGGGAAGTACGTCCAGTGGAGATAAGTGTGGagaaaatatgaaagtaaaAACAGAGACAAAAGCTGAATATCCAGTGGAAGTAAACAATGCTTGTATTAAAAGGgaagaaattgaaattaagtctGAGCAATGTGTAAATGAAAGCCTTCAAGTAGATATGTACGTGCCACAAATGCATTTGGAAGAACAACATACATATGATAAATGTGTATTTAAATGCAGCATTTGTAATTACGAGGccaaatacaaatataattttaaaaggcaTATGCTAGGCCATGGGGATTCCCCCGAAATGCAAATACACAAATGTGATTTGTGCACGTATCAAACGAAACACCGAACTAGTCTTAAGAAACACTCCATAGTTCATAAAACTTCTTCCGAGATACAAATGTACAAATGCGACTTATGCACGttcgaaacaaaatacaagGGTGTTGTCAAGACCCACATGATAGTACATAAAGGTTCCTCCGAGATCCAAATGTACAAGTGTGACTTGTGCCCGTATGAAACGAAACACCGGTACGGTCTTAAGAGCCACATGATAGCCCACAAGGATTCCTCGGAGATACAAATACACAAGTGTGACTTGTGCAAGTATGAAACAAAATACAAGAGTGACCTTAAGAAACATAAGATAATCCATAGTGATATGCAAATGTTCAAATGCGACTTGTGCACATTTGAAACGAAACACAAGAGCGGTCTCAAGAGCCACATGATAGTCCACAAAGATGCTTCCGAGATACAAATGTACAAATGTGAGGTGTGCGTGTTTGAAACGAAACACCGAAGTGGCATGAGGAAACACGTCATACTCCACAAAAGCACTTCCGAAATACAAATGttcaaatgtgaaatgtgcGGGTACGAGGCAAAATACAAATACGCCCTCAAGAACCACATGCTAGTGCACAAAGATTCTTCCGAGATCCGGATGTACAAGTGCGACTTGTGCATGTACGAAACAAGGTACCGGAGCGCCCTTAATAATCATATGATAATCCATAAGGATTGTTCTGAGACGGAAATGTACAAGTGTGATGTGTGCGTGTTTGAGACGAAACATAAGAGCGTCATTAGGAAACACATGATAGTCCACAAAAACGGTTTGGAGATGCGAATGTTCAAATGCACCTTCTGCAAATATGAAACGAAGCACAGGAACGCTCTTAGGAACCACGTGATAATCCATAAGGATTCTTCCGAGGTACAGTTGTATAAATGTGACTTATGTAAATACGAAGCAAATCGTAAGAGCTCTCTTAAGAGTCATATGATGGTTCACAAGGATTCTTTGAAAAACCACGCCGCAAACCATAAATGTTCTCCCGAAATGCAAAATAATTCGTAA
Protein Sequence: MNDKNRNKCRLCLKAIYDNNFDSIGAITIQMLEMLLLNLNLDTSASHVMCPDCATRLQKSFDFKAACICVKDKLSPVVSLRENIKSENEIITEGQMCRFCMKLTESGCFSYLWESKKNMFLVDMLQKHFPELNINTTKELVTCDTCNGSLQNMLSFIRNCLDAEDRINETLRTEEIDDKGQIRLESIQQFIFKPVLNDSDTCNTGSTSSGDKCGENMKVKTETKAEYPVEVNNACIKREEIEIKSEQCVNESLQVDMYVPQMHLEEQHTYDKCVFKCSICNYEAKYKYNFKRHMLGHGDSPEMQIHKCDLCTYQTKHRTSLKKHSIVHKTSSEIQMYKCDLCTFETKYKGVVKTHMIVHKGSSEIQMYKCDLCPYETKHRYGLKSHMIAHKDSSEIQIHKCDLCKYETKYKSDLKKHKIIHSDMQMFKCDLCTFETKHKSGLKSHMIVHKDASEIQMYKCEVCVFETKHRSGMRKHVILHKSTSEIQMFKCEMCGYEAKYKYALKNHMLVHKDSSEIRMYKCDLCMYETRYRSALNNHMIIHKDCSETEMYKCDVCVFETKHKSVIRKHMIVHKNGLEMRMFKCTFCKYETKHRNALRNHVIIHKDSSEVQLYKCDLCKYEANRKSSLKSHMMVHKDSLKNHAANHKCSPEMQNNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -