Rmor052820.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796663.1:51089991-51093003[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.02 2.3 10.7 1.0 1 20 263 282 263 284 0.96 2 12 0.77 88 5.7 0.8 2 23 299 319 298 319 0.83 3 12 0.09 10 8.6 0.3 2 23 341 362 340 362 0.94 4 12 6.6e-07 7.5e-05 24.8 1.1 1 23 365 387 365 387 0.99 5 12 1.2e-05 0.0013 20.8 0.8 1 23 393 415 393 415 0.98 6 12 0.00059 0.067 15.5 1.1 1 23 420 443 420 443 0.96 7 12 0.45 51 6.4 0.2 2 13 450 461 449 462 0.90 8 12 3.5e-05 0.004 19.3 1.4 1 23 478 500 478 500 0.96 9 12 0.0064 0.73 12.2 0.5 2 23 524 545 523 545 0.96 10 12 4 4.5e+02 3.4 2.5 1 18 551 568 551 573 0.77 11 12 0.011 1.3 11.5 0.9 1 23 580 603 580 603 0.98 12 12 0.001 0.12 14.7 2.6 1 23 608 631 608 631 0.89
Sequence Information
- Coding Sequence
- ATGGATTTTTCTCTGCCGTGTAGGACTTGTTTAGAGTGTGGAGATGCAGCAGTTTACGTGAATATTACGAAAAAGTGCCATCTTAACAATTCGGTTAGAGACGTTATAGTTATGCTAGTTCCACAAATGGCTGACTCGCTTTGTGATGCCGATTCCATTTGTGAAAATTGCTTTAATACTTTAGCTGGTTGTATgagatttattgaaaaatgtatGGAAGTTGAGGACAAAATAAAAAGGGAGCAGAGCACAGATGTTTTGGAACTCGTTTACGATGGCACAGGCgatgttGTATTAGTACCACCACCTTTGATATTAAAGGTAAGGTTTCGtacaaattgtttaataaattggaAAATAGTTGTAGATGATTCAACTGAGGAATACAGTGGTACAAGTGAACCCAAAGAAGACAAAATAAAAAGAGAGCAGAGTGGAGATGTTTTGGAGCTCGATTGCGctgGTGGCTCAACTGAGGAATATGGTGGTACAAGCGAGCACCAAGAGGAGCAGAGTTATTCTAGAAATGACGTAAAAATAGAAAGCTCGGACTCAATTATGCAAGCCTTTCCAAAGAGCATCACGGAACACAACAGAATTTTAAGCCTGCAACAACCAAACGGCGTaataatgcaaaattttatatCGGATTTGGCACAAAGTGGcataaatattttgcaagtttCCAAGGATCCTAAAGAAAGCATAAGCAGCGCAGATTATTCATACAACGGCAGCACGAATAAGAGAATACTTTTACTGGGGACGCATATTTTCAATTTGGCCTATAAATGCCCGAACTGTCCAAAACATTTACAGAATCAAAGGAAGTATACTAGCCACATCGTTAATTGCAAAAAGGTTCCGAAGataaaagagaaaaaagaaCCGCAGAAGTGTCCGTTTTGTGACAAGGTCATTAAGAATAAAATGATGGAGGGCCACTTAAAAAGACACGAAGAGAGACAACGTAAACTTGAATTACCCAAGGAAAGAAAAGAGTATAAAAAACGGGTGTTGCAATGTAGAATCTGCTTAGAAAGgttCACGACTAAAGAAGAATATGAATTTCACATAGAAATACATCCACCATATGTCTGCGACCAGTGCGGGAAGGGCTTCTCTCAGAACTCCTCCTTGTCTTCGCATAAAAAAACCCACAACAACCCGAATAGTTTCATTTGCGAAATTTGTGGGAAAGGCTACAAAGACCATGGCATGCTGAGAGTCCACCGGCAAACCCACgagaatacaaaatttaaatgcaaCTTATGTCCGAAAATCTTTCAAATCAAGTCTCGTCTTACTCGTCATGTGAAGAACGTTCATAACACTGGTGGCACAGTTCAGTGCACCCAGTGTGGAAAACTGTTTAAGAACAGGGCAATTCACGACTCTCATGTTAGattaattcacttaaaaattaagcCCTATAAATGTGAAGTTTGCGGAAAGGAATTTGGTAGGTCTGATTATTTGGTACATCACAAGGTGAGGCATACTTGTCAACCAAACAAATATGTTCCGAAAAAATTAGATATCGGGGGAAAATAtaATGAACTGTCGCTACCATGTAAATTTTGTGGAAAACGATTTCGAGGCATACCAAAGATGAAAATGCATTTGGAGACTCACATAAAGATACGCAGATTCCCTTGCCAGTTTTGTCCTTTAACATTTGCCCGtaaacaaatttgtaaaaaacacGAATTGTCGCACAAATCCTTCGAACGGTTTTTTAGATGCAACATTTGTTGGTGTAAATTGCCCTCGAGAGAAGATTTGGATGCACATGTCAAAACCAAGCATAATAATCCTCGATATACATGTACTACATGTGGGGAAATGTTCCATAGGGCGTACTTATTGAATCACCATAATTTGCTTGAGCATAGGACCCCGGAGGATACAGAGAAAGCGAAACAAATTATCCATGACAGTTTATTGGAAATTGCTGCCGCTGAATCCGAGATTTAA
- Protein Sequence
- MDFSLPCRTCLECGDAAVYVNITKKCHLNNSVRDVIVMLVPQMADSLCDADSICENCFNTLAGCMRFIEKCMEVEDKIKREQSTDVLELVYDGTGDVVLVPPPLILKVRFRTNCLINWKIVVDDSTEEYSGTSEPKEDKIKREQSGDVLELDCAGGSTEEYGGTSEHQEEQSYSRNDVKIESSDSIMQAFPKSITEHNRILSLQQPNGVIMQNFISDLAQSGINILQVSKDPKESISSADYSYNGSTNKRILLLGTHIFNLAYKCPNCPKHLQNQRKYTSHIVNCKKVPKIKEKKEPQKCPFCDKVIKNKMMEGHLKRHEERQRKLELPKERKEYKKRVLQCRICLERFTTKEEYEFHIEIHPPYVCDQCGKGFSQNSSLSSHKKTHNNPNSFICEICGKGYKDHGMLRVHRQTHENTKFKCNLCPKIFQIKSRLTRHVKNVHNTGGTVQCTQCGKLFKNRAIHDSHVRLIHLKIKPYKCEVCGKEFGRSDYLVHHKVRHTCQPNKYVPKKLDIGGKYNELSLPCKFCGKRFRGIPKMKMHLETHIKIRRFPCQFCPLTFARKQICKKHELSHKSFERFFRCNICWCKLPSREDLDAHVKTKHNNPRYTCTTCGEMFHRAYLLNHHNLLEHRTPEDTEKAKQIIHDSLLEIAAAESEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -