Rmor046389.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796663.1:1467148-1471148[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 5e-06 0.00057 22.0 3.7 1 23 272 294 272 294 0.99 2 8 0.00021 0.024 16.9 0.5 1 23 303 325 303 325 0.99 3 8 0.00072 0.082 15.2 0.9 1 23 332 354 332 354 0.99 4 8 0.00032 0.037 16.3 4.1 1 23 363 385 363 385 0.99 5 8 9.9e-06 0.0011 21.1 0.8 1 23 394 416 394 416 0.99 6 8 2.5e-05 0.0029 19.8 0.7 1 23 425 447 425 447 0.99 7 8 5.7e-05 0.0065 18.7 5.7 1 23 456 478 456 478 0.99 8 8 5.7e-05 0.0065 18.7 3.5 1 23 487 509 487 509 0.99
Sequence Information
- Coding Sequence
- ATGTACGAGAGGGACAGGATATTGCCCTTACCCGACCTCGAAAAAGATGTCAATTTGAATCCAGACGAAATCGAAACTACAAGCAACACAAAGCCACTTATGCGAATGGAAATAAAGTGCAGTTTTTGCACAAAAACTGGGGGAAGAGAAAGTTTTGTACGATTAAACGATTCAAAGAAATATGAGTCATTGGTAATTATGCTGAAACAACATATTCCTGAGATGtatttaaATAATGCCGAGGAACTCTTAACGTGTGAACCTTGTCTTGATGGGTTGCAAGGTGTTGTGAGTTTTATTCTGAAATGTTTGGAAGTGGAAgaggatataaataaatatattcaaataGAGGGAGCGGACGTTAAAGCGCCAATAGAATTAAAGGACGTACATAAGTTTATATGCAATTCAACATTAAAACCTGAAATGGATTCGTTCGATGTAAGTGGATGTTCTGATgaaattaaaaaggaatataCGACGCTGGCTGAagctgaaataaaatatgagCGAGAAGTAATGAATCCGGAGTTGGTTATTAAAACAGAAGCCATCGATATCAAATTTGACCAGAGCGATTGTGATAGATGTTCAGATGGTGTTATTTCATCACAGCCAGTTGTTACTAAGTTACGTGGAAAACGAGAATGTTCAGTGTTAAAAAGAGGTCCATTAAGAACTACCAGTAAACACAGATTGGCacatgaaaaatatttgaaaaatcttAAAAGACATCGAAGACTGCAGACGAAACTTAAAACTGGGATCCAACACCACATGCTAACCCACAAACTCTCCGCAAAAACGACGATGTATCAGTGTGATATTTGTAAGTTTAAAACAAAACGTAAACGAAACCTACAAAGACATATGTTGACACATAAAGACCGCTCAGAAATAGAAATATACCAGTGTGATATTTGTGAGTTTCAAACAAAGCGTAAAGAAGGTCTGCAAGGACATATGTTGACCCATAAAGACGATTCAGAAATATACCAGTGTGCGGCTTGTCCATTTAAGACAAAATTTAAAGGAAGCCTGCAAAGACATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTACAAAGACATATGTTGACCCATAAAGACCagtcagaaataaaaatgtaccgGTGTGATATTTGTGAGTTTAAGACAAGACAAAAAGCAAACCTGCAAATCCATATGTTGACCCATAGAGACCGCTCAGAAATAGAAATGTACCAGTGTGATATTTGTGACTATGAGACAAAAGGTAAACGATACCTGCAAAGACATATGTTGGTCCATAAAGAccagttagaaataaaaatgtatcagTGTGATTTTTGTGACTTTAAGACAAAACGTAAACATAGCCTGCAAAGGCATATGTTGACCCATAAAGACGATTCAGAAATAGAAATGTATCAGTGTGATTTTTGCGAGTTTAAGACGAAACAAAAATATAGCCTGCAAAGGCATATGTTGACCCATGAAGACCACTCTTGTGTTTCTTGTTCATATCGGATGAATCATAAAAGTTGCATTCAAAAGCATGTACTAACTCACAACCTCTCCGCAGAAACAACGGACTAG
- Protein Sequence
- MYERDRILPLPDLEKDVNLNPDEIETTSNTKPLMRMEIKCSFCTKTGGRESFVRLNDSKKYESLVIMLKQHIPEMYLNNAEELLTCEPCLDGLQGVVSFILKCLEVEEDINKYIQIEGADVKAPIELKDVHKFICNSTLKPEMDSFDVSGCSDEIKKEYTTLAEAEIKYEREVMNPELVIKTEAIDIKFDQSDCDRCSDGVISSQPVVTKLRGKRECSVLKRGPLRTTSKHRLAHEKYLKNLKRHRRLQTKLKTGIQHHMLTHKLSAKTTMYQCDICKFKTKRKRNLQRHMLTHKDRSEIEIYQCDICEFQTKRKEGLQGHMLTHKDDSEIYQCAACPFKTKFKGSLQRHMLTHKDLSEIELYQCDSCEFKTKHKESLQRHMLTHKDQSEIKMYRCDICEFKTRQKANLQIHMLTHRDRSEIEMYQCDICDYETKGKRYLQRHMLVHKDQLEIKMYQCDFCDFKTKRKHSLQRHMLTHKDDSEIEMYQCDFCEFKTKQKYSLQRHMLTHEDHSCVSCSYRMNHKSCIQKHVLTHNLSAETTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -