Rmor010686.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:133717875-133719932[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.028 3.2 10.2 0.6 1 23 426 448 426 448 0.93 2 9 2.5e-06 0.00029 22.9 2.8 1 21 459 479 459 480 0.94 3 9 0.0002 0.023 17.0 2.6 1 23 487 512 487 512 0.96 4 9 0.0012 0.14 14.5 0.1 3 23 520 540 519 540 0.98 5 9 2.2e-05 0.0025 20.0 1.9 1 23 546 568 546 568 0.98 6 9 5.8e-05 0.0066 18.6 0.5 1 23 574 596 574 596 0.97 7 9 1.4e-05 0.0015 20.6 1.9 1 23 602 624 602 624 0.97 8 9 3 3.5e+02 3.8 1.6 2 23 632 651 632 651 0.75 9 9 0.00029 0.032 16.5 3.8 1 23 657 680 657 680 0.97
Sequence Information
- Coding Sequence
- ATGAACGAAAAGCTGTATACTGGAAATTATTACCAGTCTCCCCAGTGTGCAAAACAGGTAGATCAAAATGAACCCCACACTTACTATTCAACCATTCCATTAAATACTACGTTTTCTCCTACTGCAAATTTTATGGATATTTATAATATTGCGCCGCAAAGCCTTACGCAAAACATTACCCGAAGTCAACATAACGCCTGTACTTCCGTTGGAATGTATCAAGAACAAGACTTGCTAAGCTGGGAGAATAGAATACTACCTGAGGTAGAAAAAGCGATAAAAATCCCAGATAAAATGGAAATGATTGAAATTACGAGCAAAGATTTGAGTCCTGCTAGTTATTGCAGTAATATAGGAGACATGTTAGTTCCTGAGTGCTATAAATCGGCAGGTAAAGATGTGAGTTACTATAACAATCAGTGGTActataatcaaaataattacgGTCAAAAAAGCTTTGAGTACCCCTCCTGTGCGCAAGAGAAGTCTACAAAATATTGCAACTTTTCAAAGGCTCAGGATTTGGACATGATAATAAAAAGTTGCAGTTATAACAGCGATATTATTCTTCCAGatgacatattttataaaaacactaGTTCTAAAACAATTTCTAACGAAATGGTACCTGATTACACTACTTATAACAGCTACTATGACAAATTCTCAGAAAATCAAATGCCAGCTCAAAATAACGATTACTTTAACTCGTCCACGCATATTCCTTTTGAGCCCATGATTAATGCAATTGATCAACAAACCGAAGGGTCAAATGAAGAGAGTGATATTATCGTTGAAGAATCAGATGAAGAAATCACGGATTACAGCGAAGACCAAGAGAAGCGACTATATTACCAAAcgaataaatgtttaatttgcaaTGTGGCGTACACACCTCTAGGTATGCAGTTTTACTTTTTAACCGTGGAAAATCCACTTACGATGTCAACTCAAAAAcccgtttttaataaaattgtcaatattataggCAAACTTTCCACCACCAGGAATTACCTATGTAGCGAATGTTTAGGACTAATTAACACTATCGACCACCTACAACTGAAACTGGACAATTTTAATGCAGAATTGGTTacgaaatttaagaaaacttgTGTTGCCAACAACGTAGAGTACGAGGAGAAAACTCAAACCAGGCAAATAAAACGGtattacattaataaatttccaaaataCAAGTGTAAGCTTTGCAAAAAAGTCTTGTGCTTGAAAAAATACTGCCTTTATCATTTGAAGAAACATAAAAGGCGCCGCTATCTGTGCGAGTTGTGTGGGGCGATTTTCTCAAATAGGAAAAAGTTTGCGTTGCACAGCACGCGACATAGAACCAAGCCTAATACCAAGATAGATTCGTTTAAATGCTCAAACTGTGATAAAACGTTTCGAACGAAATCCAATCTAAAAGAGCACAAAAACTACTGTTTAGGAACGTTgccttttaaatgtaaaaatcaatattgcgataaaaaatttgcatcagCCACGAAACTAAAAAACCACGTCAAACTTAAGCACGACAAGAAATTCATTGCGATTTGTTCTATCTGTAATATAGGATTTATTAAAGTGTCcgattataaaagtcacatgaTCACTCACAGCACCGATAAAAAATACGCCTGCACCAAGTGTGATAAAAGCTACAAGACATTAAGCAATTTGAATTTCCACATGAAAATACACAGCGACCAACTGCCCTTTAGTTGCAACGTGTGCCAAAAAGGATTCATGAGGAAAGAATACTTAGAGGCACATGTAAACAACCACAACGGGGTGAAAAACTTCAATTGTACGATTTGCGATAAGAAGTTTGTGTCGCAAAAAAATCTAGACTCCCATTTAAAGTACCACGAAGGCACGGTGAAGAGGAATACTTGCAATATCTGCGGGAAGACAATGACGAGTGGCTTTGAGGAACACTTACGGGTACACAACAATTTGAGGGAATTCGAATGTGAGCACTGCGAAATGAAATTCAATACTAAAGGGACTCTCTCTAAACACGTTAAGAAAAAACATTGTGATGTTATTACCTAA
- Protein Sequence
- MNEKLYTGNYYQSPQCAKQVDQNEPHTYYSTIPLNTTFSPTANFMDIYNIAPQSLTQNITRSQHNACTSVGMYQEQDLLSWENRILPEVEKAIKIPDKMEMIEITSKDLSPASYCSNIGDMLVPECYKSAGKDVSYYNNQWYYNQNNYGQKSFEYPSCAQEKSTKYCNFSKAQDLDMIIKSCSYNSDIILPDDIFYKNTSSKTISNEMVPDYTTYNSYYDKFSENQMPAQNNDYFNSSTHIPFEPMINAIDQQTEGSNEESDIIVEESDEEITDYSEDQEKRLYYQTNKCLICNVAYTPLGMQFYFLTVENPLTMSTQKPVFNKIVNIIGKLSTTRNYLCSECLGLINTIDHLQLKLDNFNAELVTKFKKTCVANNVEYEEKTQTRQIKRYYINKFPKYKCKLCKKVLCLKKYCLYHLKKHKRRRYLCELCGAIFSNRKKFALHSTRHRTKPNTKIDSFKCSNCDKTFRTKSNLKEHKNYCLGTLPFKCKNQYCDKKFASATKLKNHVKLKHDKKFIAICSICNIGFIKVSDYKSHMITHSTDKKYACTKCDKSYKTLSNLNFHMKIHSDQLPFSCNVCQKGFMRKEYLEAHVNNHNGVKNFNCTICDKKFVSQKNLDSHLKYHEGTVKRNTCNICGKTMTSGFEEHLRVHNNLREFECEHCEMKFNTKGTLSKHVKKKHCDVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00886823;
- 90% Identity
- -
- 80% Identity
- -