Rmor042345.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796662.1:12942768-12948611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.061 7 9.1 0.9 1 23 37 59 37 59 0.95 2 14 8.4e-05 0.0095 18.1 0.8 2 23 89 110 88 110 0.96 3 14 2.8e-05 0.0032 19.6 1.7 1 23 116 139 116 139 0.95 4 14 6.6e-06 0.00075 21.6 0.4 2 23 145 167 144 167 0.95 5 14 5.3 6e+02 3.0 0.1 2 20 173 191 172 194 0.86 6 14 0.0035 0.4 13.0 0.2 2 23 199 221 198 221 0.92 7 14 0.22 25 7.4 2.6 2 23 226 247 226 247 0.94 8 14 0.037 4.2 9.8 4.3 2 23 251 272 250 272 0.95 9 14 0.3 34 7.0 0.6 3 23 279 298 277 298 0.87 10 14 0.023 2.6 10.5 0.4 1 23 330 353 330 353 0.92 11 14 9.1e-05 0.01 18.0 4.0 1 23 362 384 362 384 0.97 12 14 0.0019 0.21 13.9 1.6 1 23 390 412 390 412 0.97 13 14 0.33 38 6.8 2.1 1 20 417 436 417 437 0.94 14 14 0.17 20 7.7 0.0 3 23 444 465 442 465 0.89
Sequence Information
- Coding Sequence
- ATGGAGACACATGTGTTTGTAAAGAAGGAGATAATTGAAGATGAGGATGAAATTAAAGATACTCCAGACTTGGTAGACCCATATAGTTTACAACAAATTAAGTCTGAATTTAATTGTATGATTTGCACCGAGAAATTTGCACATAAACTATCACTAGACATACACGAAATGCTCCACAATGATACCTACTTTTGTTTCTTATGCAAGACAAATTATAGACCACAAAATTTTCCAGAACATGTGAGAAAGATGCATATGAATTTAATATGTAACATATGTAATAAAGTTTTTGGCTATAAGAAGGCATTTAAGTTACATCAGAACTCGCATACTAAAGAATGTATCTACAAGTGCGACCAATGTGATAAATCTTTTATGCAACGTGGTTCTCTAAGGACACATAAGTATTCTGCTCATGAGGGACGCAAATTAGAATGCAAGATATGCGGTGGGACATTTATTACCTCATCAAGTTTGAACAGACATTTAAAGAACATGCATTCTATTAAGCAACTGTATTGCCGAATATGTCTTGAGGAATTTCCCGATAAAAAGGCAAGGAATGACCATGAAGTGGATCACACGAAATCTAAAGTTTGTCAAGAATGTGGTGTTGAATATACAAAGATATCATCCCTTACCAAACACTTAACTGCAACACACTTCCGGACCGAAAAATGtgaatattgtaaaaaattatttcaccgATTAAAGCTTCAAACACATATAATGGCAATTCATAGCCCTAAAGagtgtaaaatttgtaatagGATATTTTACACTTCAAGAAGCTTCGTGCAGCATTGTCGTAGCCATAGTAACAAGACCATAATCTGTAAAATTTGTCGCAGGCGATTTAAAGAACCATACATGGAAAAACATTTGCTACAACAcagacaaaatgaaataaaaaaatgtaacatttgTAACAGATATTTAGTGGATATGGAAAAACATGACACCTTAAAtcataaaaatgataaatactACATTTGTAGATACTGTCctagaaaatttttaaccaAAGTGAGTCTCAGAGAGCATGCAGTAAAGGGACATAGGAGAAGAGatagtaaaaataaacacaagtgtaaaatctgttttaaaattttcggtAGCAGATATAACTTACAAAGACATTATATAAATCATAGCACTTATCGTCCTTACAAATGTGAAGTGTGTTTAAGTCAATTCAAGcatccaataaatttaaaacgccATGAGGTCACCCATACTGAAAAGAAATTTGAGTGTAAGACATGCCTTAGAAAATTTCGTCTTGAAAGAACTTTGATTGCCCATAAATGTCCAGGTGATACTGTTGCTTGTGTTGTATGCGAAATAAAGTTTGGAAACGACAAAAACTTAAAAGATCATCAAGTGGCAATGCACTCTCCTAGGATAGTTAATTCTATGAAACAAGGTTTCAACATACTCGAGCCATATTTTCATCTTAATAGCATGAAACCAACTGGATCAAACAACAACCCCCTTTTTGAGATTAAGGCAGAATTGAAGGGAAAATTGACTGTTGATAAAATTAAACTGCAGAATGATGATATTCCGTTAACTAATGAGGATGTTGTGGAAAAAACTCCTGTTGTTAAAGTAAAACATGAAACAGTAGTAAAAGAGGAATTGCCTTCTGGtgaaacatatatttataatgatgggtattcgTAA
- Protein Sequence
- METHVFVKKEIIEDEDEIKDTPDLVDPYSLQQIKSEFNCMICTEKFAHKLSLDIHEMLHNDTYFCFLCKTNYRPQNFPEHVRKMHMNLICNICNKVFGYKKAFKLHQNSHTKECIYKCDQCDKSFMQRGSLRTHKYSAHEGRKLECKICGGTFITSSSLNRHLKNMHSIKQLYCRICLEEFPDKKARNDHEVDHTKSKVCQECGVEYTKISSLTKHLTATHFRTEKCEYCKKLFHRLKLQTHIMAIHSPKECKICNRIFYTSRSFVQHCRSHSNKTIICKICRRRFKEPYMEKHLLQHRQNEIKKCNICNRYLVDMEKHDTLNHKNDKYYICRYCPRKFLTKVSLREHAVKGHRRRDSKNKHKCKICFKIFGSRYNLQRHYINHSTYRPYKCEVCLSQFKHPINLKRHEVTHTEKKFECKTCLRKFRLERTLIAHKCPGDTVACVVCEIKFGNDKNLKDHQVAMHSPRIVNSMKQGFNILEPYFHLNSMKPTGSNNNPLFEIKAELKGKLTVDKIKLQNDDIPLTNEDVVEKTPVVKVKHETVVKEELPSGETYIYNDGYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -