Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796662.1:12955697-12958062[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0061 0.7 12.3 0.3 2 23 47 68 46 68 0.94

2 18 1.7e-05 0.0019 20.4 0.3 2 23 97 118 96 118 0.97

3 18 1.2e-06 0.00014 23.9 1.5 1 23 124 147 124 147 0.98

4 18 3.9e-06 0.00044 22.3 0.9 1 23 153 176 153 176 0.98

5 18 0.33 38 6.8 4.3 1 23 182 204 182 204 0.97

6 18 0.00018 0.02 17.1 0.3 3 23 210 231 209 231 0.93

7 18 3.7 4.2e+02 3.5 3.4 2 23 236 257 236 257 0.91

8 18 0.0027 0.31 13.4 0.8 3 23 262 282 261 282 0.98

9 18 0.79 90 5.6 1.4 5 23 290 307 287 307 0.90

10 18 3.2 3.7e+02 3.7 2.4 2 22 314 336 313 336 0.85

11 18 1.1 1.3e+02 5.1 7.1 2 23 340 362 339 362 0.93

12 18 0.27 30 7.1 1.7 2 23 370 391 370 391 0.97

13 18 0.028 3.2 10.2 5.9 1 23 397 419 397 419 0.98

14 18 0.049 5.6 9.4 4.1 1 22 431 452 431 452 0.93

15 18 0.00028 0.032 16.5 1.0 1 23 456 479 456 479 0.98

16 18 2.2 2.5e+02 4.2 9.6 1 20 510 529 510 531 0.94

17 18 0.0024 0.27 13.6 3.7 1 23 538 561 538 561 0.97

18 18 1.2 1.4e+02 5.1 0.5 2 23 567 589 566 589 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0061	0.7	12.3	0.3	2	23	47	68	46	68	0.94
2	18	1.7e-05	0.0019	20.4	0.3	2	23	97	118	96	118	0.97
3	18	1.2e-06	0.00014	23.9	1.5	1	23	124	147	124	147	0.98
4	18	3.9e-06	0.00044	22.3	0.9	1	23	153	176	153	176	0.98
5	18	0.33	38	6.8	4.3	1	23	182	204	182	204	0.97
6	18	0.00018	0.02	17.1	0.3	3	23	210	231	209	231	0.93
7	18	3.7	4.2e+02	3.5	3.4	2	23	236	257	236	257	0.91
8	18	0.0027	0.31	13.4	0.8	3	23	262	282	261	282	0.98
9	18	0.79	90	5.6	1.4	5	23	290	307	287	307	0.90
10	18	3.2	3.7e+02	3.7	2.4	2	22	314	336	313	336	0.85
11	18	1.1	1.3e+02	5.1	7.1	2	23	340	362	339	362	0.93
12	18	0.27	30	7.1	1.7	2	23	370	391	370	391	0.97
13	18	0.028	3.2	10.2	5.9	1	23	397	419	397	419	0.98
14	18	0.049	5.6	9.4	4.1	1	22	431	452	431	452	0.93
15	18	0.00028	0.032	16.5	1.0	1	23	456	479	456	479	0.98
16	18	2.2	2.5e+02	4.2	9.6	1	20	510	529	510	531	0.94
17	18	0.0024	0.27	13.6	3.7	1	23	538	561	538	561	0.97
18	18	1.2	1.4e+02	5.1	0.5	2	23	567	589	566	589	0.93

Sequence Information

Coding Sequence: atggataTAAAATCCGAACCATTTGAATTAGAACATGAAATTATTGATATTCCTGATTTTGTGGAGTTGACATCTTTGGAGAAGATGAAAATAGAAAATGTCGATGGAAATAATATAATAGTGGAACCTGCTGAATTGAAATGCGAAGattgtaaagaaaaatttatgaaTGAGGTAGCtttgaaaatacacgaaatgtTCCACAGCAAAACGAATTATTGTTTCGTTTGTAAGAGAACAATAAGACTTAATTTTCATGATCATATAGAACGCAGACACATGAATCTTGTTTGTGGAATATGCTCTAAAGTATTTACTTTAAAAACAACTTTGGAGAACCACATTAGATCTCACACAAAGGatagaatatttaaatgtgaTAAATGTGACAAATCGTTTATGCAAAAGGGGGCTTTGACTAGCCATTTAAGGTCAACTCATGAAGGAATTAAGCCATATGTTTGTCAGatTTGCGAGGGAACATTTACCACTTCCTCAAGTTTAAAAAAGCACGTTAGAAAAATGCATTCCAGGGATGAGATTCATGAATGTCGTATATGCAgtgaaaaatttaatgacaAAAAGAAGAAGATGGACCATGAAAAAAAACATACGCACTCCAAAAACTGTGAAGTATGTGGTAAGATATTTACAAGATTGGATAATGTGTCAAAACATCTTGTGTCAACTCATTTTCGGACTGAGAAATGCAAACACTGTAATACAATGTACCATAAATTATTACTTGGTGCTCATATTCTCGAAAAACACCAACCGAGAGCCTGTGATGTTTGCAATACAACTTTTTATGATGTAagatcatttaaaaatcaccgAGAGACTCATAACATCAGAATAATGTGTATTCTATGTgggaaatattataaacaagaTAATATGAAGAAACATTTACAATTTCACCGTGAAAACAAAGTAAAGAAATgtgaaatttgtaattatgtatttttagaTATTGATAAACATAATTTGCGAAGTCATAGAAACACCAAATATTGCTTTTGTCATCTATGCCCTAAAAAATTTCTATCAAAATCAAGTAAAAGGCGACACATCtttaaagaacatttaaaaGTATTAGGAAATAATGTATGTAAGTTCTGTGGTATGAAATGCAAAGGGTCTGCTATATTGAGACAACATTTAAACATGCATTATCAATTGCGTCCATATAAATGCCTAATGTGTAGGAAAGGTTTTAAGTATTTGCATAGGCTAGAAAAACATAAGAAGCAGCATGATGACTTTAGAGTAGCAAAAAAAGATTATAAGTTTAATTGCACCACTTGTGGTAGaagatttaaaattgaaattagttTGAAACATCATAAATGCACAATAGGAAAATATAAATGCAATATATGTGATCTTCAATATCGGGCTAAACCTTATCTGAAGAAGCATTTAATTACATATCATTCTCCAATGATTTTAACAGAGGAAAACGATTGGGATTTAGACAAGCccactttaaaaaatatgaatgtttCACATGGCAATACAAGAAAATATCGTTGTAGAAAATGTCGGATGGTTTTTACACACTGCAACtcatttagaaaacatttttgtaacacacAACAAACAGGCGGTTATACTTGCTCGTTAtgtcataaaaaatatagaacaaAAAATTATGTAGCACAACACATTGAAAAGAACCATCCCAAAAGGAAAGTAAAATGTAATGAATGTGAGTTCTTGtctgtaaataaaatttctatgaGAAGACATTATGTGCGAATGCATGCAATGAAAGAAATCAACAAAGTCAATACCGTGCTAGAACATGATGTACCTGAAAATAAAAGGAAACTTATTAGCGAAAACAGTGAAGTAAAAAATATGGATACTTAA
Protein Sequence: MDIKSEPFELEHEIIDIPDFVELTSLEKMKIENVDGNNIIVEPAELKCEDCKEKFMNEVALKIHEMFHSKTNYCFVCKRTIRLNFHDHIERRHMNLVCGICSKVFTLKTTLENHIRSHTKDRIFKCDKCDKSFMQKGALTSHLRSTHEGIKPYVCQICEGTFTTSSSLKKHVRKMHSRDEIHECRICSEKFNDKKKKMDHEKKHTHSKNCEVCGKIFTRLDNVSKHLVSTHFRTEKCKHCNTMYHKLLLGAHILEKHQPRACDVCNTTFYDVRSFKNHRETHNIRIMCILCGKYYKQDNMKKHLQFHRENKVKKCEICNYVFLDIDKHNLRSHRNTKYCFCHLCPKKFLSKSSKRRHIFKEHLKVLGNNVCKFCGMKCKGSAILRQHLNMHYQLRPYKCLMCRKGFKYLHRLEKHKKQHDDFRVAKKDYKFNCTTCGRRFKIEISLKHHKCTIGKYKCNICDLQYRAKPYLKKHLITYHSPMILTEENDWDLDKPTLKNMNVSHGNTRKYRCRKCRMVFTHCNSFRKHFCNTQQTGGYTCSLCHKKYRTKNYVAQHIEKNHPKRKVKCNECEFLSVNKISMRRHYVRMHAMKEINKVNTVLEHDVPENKRKLISENSEVKNMDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -