Rmor046413.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:1605853-1611346[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.012 17.8 2.8 1 23 352 374 352 374 0.98
2 19 0.011 1.3 11.4 6.1 1 23 383 405 383 405 0.99
3 19 6.8 7.8e+02 2.7 5.0 1 23 414 436 414 436 0.96
4 19 0.016 1.8 10.9 0.9 1 23 445 467 445 467 0.98
5 19 0.017 1.9 10.9 2.0 1 23 476 498 476 498 0.98
6 19 0.38 43 6.6 3.4 1 23 507 529 507 529 0.98
7 19 0.00091 0.1 14.9 2.7 1 23 538 560 538 560 0.99
8 19 0.021 2.4 10.6 1.9 1 23 569 591 569 591 0.97
9 19 0.002 0.23 13.8 1.5 1 23 600 622 600 622 0.98
10 19 0.028 3.2 10.2 2.5 1 23 631 653 631 653 0.98
11 19 0.00016 0.018 17.3 0.8 1 23 662 684 662 684 0.99
12 19 0.0044 0.49 12.7 4.3 1 23 693 715 693 715 0.98
13 19 9.9 1.1e+03 2.2 5.1 1 23 724 746 724 746 0.96
14 19 0.017 2 10.9 1.3 1 23 755 777 755 777 0.99
15 19 1e-05 0.0012 21.0 1.7 1 23 786 808 786 808 0.99
16 19 0.015 1.7 11.0 0.8 1 23 817 839 817 839 0.99
17 19 0.018 2 10.8 0.7 1 23 848 870 848 870 0.99
18 19 0.019 2.1 10.7 1.2 2 23 880 901 880 901 0.98
19 19 0.63 72 5.9 2.8 1 23 910 932 910 932 0.99

Sequence Information

Coding Sequence
ATGGGAAATCTCCCAAGAGTAATATGCAGGCTTTGCTTGAGGAAATGTGTCGATTTTGAAGCTGTACAAGACTATACGAAAGATGTGTTGGAAGTACTTTTACTGAAAATAAATCTGGCCATTAGCGAGGCACCCGTCATGTGTACAAACTGTGCGGCAATGCTGATGagatgttttgattttaaagcgATGTGTTTTTACACTCTAGATTATATAGTTCCGTTTCTTGATGATGAGAAAATTTCGAAGGTGGATCTAAAAAAGGTCTTTATGAACAAATGTGACAAGATTGATATACCTGAGGATTACAGCGTGTGCGGATTTTGCATGGAACTACTCAAGAAGAACAGGGCTGTATCCTTCGATAGTAAAGAGGAAGGGGTTATGTTGCAGAGATTAACGAAAGAATATCTTCCCGAATTGGACTTTAGTACCATCGAGGATCCAATGGTCTGTGCGCCCTGCTATGAATCGTTAAAGACTTGCTCCCATTTTGTAACCAGCTGCTTAATTGTGGAAGAAAAGATAACGGAATATCGCAAATTAACAGGTGCAGATGTTATAGAAATCAAAGACGTACTACAGTCGACATCTATAACTGTATCGAAACTAGAAGAAGATGGTAATGCCATTGGCATAATCAAAACGGAAGAAAAATTTTGTGTCGATATGGGCAATGCCGATGAACAGGTTGGACACGAAAATGGCAGTTTTGGCAGCACGGAGGAACAGAAACTTTTACTAAACGAAAAAGTTGAAATAAAAACGGATCAACATGATTTCGACAGATGTTTAAATGATGTTTCGTTACAACCAGTTACTACTAAGTTTCGTGGAATACGAGAATGTTCAGAGTCCAAGGGAGGTCCGTTAAAAACATCCAAAATGCAGAAATTGGCTGATAATGTTTCAGAGGCAAGAAAGTACCAAGTCCATAAAAACACTTCAGGAATAACAATCTACCACTGTGACTCTTGTTCATTTCAGACGGAACATAAAAATGGCATCCATCATCACATGATAACCCACAAACTGTCCGCAAAAATGATGATGTATCAGTGTAATATTTGTGAGTTTAAGACAAAACGTAAAGGAAACCTGCACCAACATATGTTGATCCATAAAGACCAGTCAGAAATAGAAATGTACCAGTGTGATTCTTGcgattttaaaacaaaacataaatgtAACCTGCAAGGACATATGCTGACCCATAAAGATCTCTCGGACATAGAAATGTTCCATTGTGATATTTGTAGCTTTAAggcaaaatgtaaaatatacctGCGAAGACATATGTTGATCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGTGTGGCTTGCCCATTTAAGACAAAATATAAACGGAGCCTGCGAAATCATATATTGATCCATAAAGACCTctcagaaatagaaatgttccAGTGTGATATTTGTGGCGTAAaggcaaaatgtaaaaaatacctGCAAAAACATATGTTGATCCACAAAGACCACTCAGAAATAGAAATGTACCAATGTAATTTTTGTGAGTTTAAGACAAAACATAAACAAAGCCTGCCAGGACATATGTTGACTCATAAAGATCAGTCAGAAGTAGAAATGTACCAGTGTGATTCTTGCGATTTTAAAACAAAACGTAAATATAACCTGCAAGGACATAGGCTGACCCATAAAGATCTCTCGGACATAGAAATGTTCCATTGTGATATTTGTGGCTTTaaggcaaaatataaaaaatacctgGGAACACATATGTTGATCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGTGTGGCTTGCCCATTTaagacaaaatataaacaaagcCTGCAAAGACATATGCTGACCCATAAAGATCTCTCAGAAATAGAAACGTTCCAGTGTGATATTTGTGGCGTAAcggcaaaatgtaaaaaatacctGCAAAAACATATGTTTATTCACAAATACCGCTCAGAAATAGAAATGTACCAATGCGATTTTTGTGGGTTTCAAACAAAACGTAAAGATGGTCTGCAAGGACATATGTTGACCCATAAAGACCagtcagaaataaaaatgcaCCAATGTGATTCTTGcgattttaaaacaaaacataaaagtGCCCTGCAAGGACATATGCTGACCCATAAAGATCTCTCAGACATAGAAATGTTCCATTGTGATATTTGTAGCTTTAAggcaaaatgtaaaatatacctGCGAAAACATATGTTGATCCATAAAGACCATTCAGAAATAGAAATGTACAAGTGTGCGGCTTGTCCATTTAAGACAAAATATAAACGAAGCCTGAAAGGACATATGTTGACCCATAAAGATCagtcagaaataaaaatgtaccaGTGTGATATTTGTGAGTTAAAGACAAAACGTAAACGAAACCTGCAACAACACATGTTGACCCATAAAGACcactcagaaataaaaatgtaccaGTGTGCGGCTTGCCCATTTAAGACAAAATATAAGCGAAGCCTGCAAGGACATATGTTGACCCATCAAGACCAGTCAGAAATAGAAATGTACCAGTGTGCGGCTTGTCCATTTAAGACAAAATATAAGCAAAGCCTGCAAGGACATATGCTGACCCATAAAGATCACTCAGAAATAGAAATGCGCCAGTGTGATTCTTGCGATTTTGAAACAGAACATAAATATAGTCTGGTTGAACATATGTTGACCCATAAGGACGACTCAGAAATAGAAATATACCAGTGTGTCTCTTGTTCATACCAGACGAAATATGAAAGTTGCATGCAAGAGCACATACTAACCCACAAACTCCCCACAGAAACAACGGGCTAG
Protein Sequence
MGNLPRVICRLCLRKCVDFEAVQDYTKDVLEVLLLKINLAISEAPVMCTNCAAMLMRCFDFKAMCFYTLDYIVPFLDDEKISKVDLKKVFMNKCDKIDIPEDYSVCGFCMELLKKNRAVSFDSKEEGVMLQRLTKEYLPELDFSTIEDPMVCAPCYESLKTCSHFVTSCLIVEEKITEYRKLTGADVIEIKDVLQSTSITVSKLEEDGNAIGIIKTEEKFCVDMGNADEQVGHENGSFGSTEEQKLLLNEKVEIKTDQHDFDRCLNDVSLQPVTTKFRGIRECSESKGGPLKTSKMQKLADNVSEARKYQVHKNTSGITIYHCDSCSFQTEHKNGIHHHMITHKLSAKMMMYQCNICEFKTKRKGNLHQHMLIHKDQSEIEMYQCDSCDFKTKHKCNLQGHMLTHKDLSDIEMFHCDICSFKAKCKIYLRRHMLIHKDHSEIEMYQCVACPFKTKYKRSLRNHILIHKDLSEIEMFQCDICGVKAKCKKYLQKHMLIHKDHSEIEMYQCNFCEFKTKHKQSLPGHMLTHKDQSEVEMYQCDSCDFKTKRKYNLQGHRLTHKDLSDIEMFHCDICGFKAKYKKYLGTHMLIHKDHSEIEMYQCVACPFKTKYKQSLQRHMLTHKDLSEIETFQCDICGVTAKCKKYLQKHMFIHKYRSEIEMYQCDFCGFQTKRKDGLQGHMLTHKDQSEIKMHQCDSCDFKTKHKSALQGHMLTHKDLSDIEMFHCDICSFKAKCKIYLRKHMLIHKDHSEIEMYKCAACPFKTKYKRSLKGHMLTHKDQSEIKMYQCDICELKTKRKRNLQQHMLTHKDHSEIKMYQCAACPFKTKYKRSLQGHMLTHQDQSEIEMYQCAACPFKTKYKQSLQGHMLTHKDHSEIEMRQCDSCDFETEHKYSLVEHMLTHKDDSEIEIYQCVSCSYQTKYESCMQEHILTHKLPTETTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-