Rmor052829.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796663.1:51135997-51139124[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.31 35 6.9 0.0 2 21 331 350 330 351 0.94 2 13 0.21 24 7.4 1.0 2 23 367 389 366 389 0.95 3 13 2.5e-05 0.0028 19.8 1.1 1 21 395 415 395 416 0.95 4 13 9.3 1.1e+03 2.3 0.9 2 23 427 447 427 447 0.94 5 13 0.32 36 6.9 0.6 1 23 451 473 451 473 0.93 6 13 0.5 57 6.3 1.8 3 23 485 502 483 502 0.79 7 13 0.00066 0.075 15.3 3.0 1 23 509 532 509 532 0.95 8 13 0.0031 0.36 13.2 5.4 1 23 538 561 538 561 0.95 9 13 0.00031 0.036 16.3 0.4 1 23 567 589 567 589 0.96 10 13 0.00086 0.097 15.0 1.3 2 23 613 634 612 634 0.98 11 13 0.0026 0.3 13.4 4.7 1 23 640 662 640 662 0.98 12 13 0.00028 0.032 16.5 0.2 1 23 669 691 669 691 0.97 13 13 1.9e-05 0.0021 20.2 1.5 1 23 697 720 697 720 0.95
Sequence Information
- Coding Sequence
- ATGACTCAAGTCAAGTGTAGAACATGTTTAGAAAAAGCAAACTTCAATTCCTCATGCAGTATATCACAAGAATTTCTTCTGGGGAAATCATTTAAAGATGTTCTGCTTATGTTTGTGCCGCAAATGattacTGTGACTGAAGTTGACgaaattttatgtattaattgttcAGAACATTTAAAAGCATTCGCGAGGTTTATTAGAAGATGTATCGCAGTTGAGGAGGCTTTAAAGAATGCTAAAGCACAAGAAGAggaaattacacaaaatgagaATAATAGATGTTTGCCCGATAATAAACGTTTACCATCAATTCCTCGCAATGAAATTGGGAGCAACATGCAGGATCTACGAGAGCATAAGGGCCACTCTTCGACGTATCCTTGCACAAGCGAAACAGATAATCAAATTACCATTAAAGAGGAAGTGGTTGAATGGTCCGACACACAGGAGTTGACGCTGTTTCCTGTGCAACCTCTTTTCGATGTCGATAAATTCAGAGAGACGTATTCGCAGTTTAAGTCTGAAATATGTATCCAGGATGAACAGGTAGAGTTGCAGGCGCAACAGAATACAATAGGGAAAAGAAAGTGCGAATCTTGTGATGTGCCCCTTTCCACTGATAATAGTTTGACGGTAGCAACAAAATGCAATAGATGCTTGGACGGAGACAACACGCAGCCTTATATTATTGATATTTCAAGCAATAGTAGTTTTGAGTATGATAACGATGGTTTGGCCCCCATATTCGAAGAAGACGCCGAGAAAGATGACGGTGATATCATCATGCAATTTGAAATCATGGAGGACGAGCAGTGTGGTATTCAAGACGACTCCCGAAACCCCAGTCCAGTTGGATACCATGACAGAGTTATAACCGTCGCTCATACAGATGAAATACTTTCAGCAGCAAGAGAGAGCACTATCGATATATATGATTATAGCACGTCGGACGAGAAGAGGATACTTTTTTTCGGTTCGGTGTTTGTAGAATGTCCTAAATGCAAAATTAAGCTTGAAGACGGCCAGAACCTTGAGGACCATCTCAGAGTCTGTACTCCTAAACTTACCAAAGACGTAAAGGAAAAGCCAGAAGTCACGTGCCCAATTTGTAAGATAAATATGTATACAACCAAAATGTTGACCAAGCACTTATGCGTGGCTCACGAAAATTACAAGCCGTATAAATGCGAGAAATGTGGCAGGAGTTTCAGAATGAAATACACTCTTGCTAATCATGTGAAAAAGTACGAGAAGTTTGACAGTTGCGATTTTCGAAAATGTTACTTTTGCTCCGAAATGGTCAGCAGGGAAAATTATGCAAGCCACAGTAAAACCCACACAAAATCTTTTGTTTGTAACGTATGTGGCCTAGGATTCTTGGCGGCCCACCATTTAGAATTGCATAGTATAAAGCATACAAATACGAAAGAAGGAACACGAGAGCAACTTTGTCCTAAGTGCGGCAAGATGACGAAGCACTTGGATGTCCACATAAAAACTCATGAGCCCACAAACAAAACGTACATGTGTCACAAGTGCCCGAAGTTTTTCTTGACTCGAAGCTACCTGAACAAGCACATTGCGTACGTTCATCAAGACGTGAAGAGGTTCCACTGCTCGGATTGTGATATGTCGTACAGTTCGTCTAGCTCCTTAAGTTACCATCACAAattgAAACATGCGCAAGTTTACCCATACACTTGCGAAATTTGTGAACAGGGGTTTTCTCGTGTTGATTCGTATAAGCGACACGTAGATAATCATCCCGCTGAAGGGAAACGCATTACACGACGTAAATACCGTTATTCGTCGGATAAAACATCTGGTCCTGTAAAGTGCAAGTATTGCTCTAAACTGTACACGACAGTCTACAAGCTAAGAGTTCACCTTTTAACGCACATAAAGGAGATGAGATACAAATGCCAAATTTGCCCGCTTAGCTTTGCCAGCCATTCCAACAAACACAGGCATGAACAGAGACATAAGAATCCTTACTTTGAATTCAGCTGCGAAATTTGTTGGAAGCGGTTGGAAACAAAGGAAGAACTAGAGAAGCACGTCATTAAGCACGAGAGGTCGAAGAAATATAAGTGCCAGATTTGCGACGAATCATATGCTCGACAGTATTTGTTGAATCACCATATATCTGAGAAGCACACAGACATAGAAGAGCTAGAGAAAAAAAAGGAAGCAGTTCTGACGGATGCTTTAGAAGAATTTTTACTATAA
- Protein Sequence
- MTQVKCRTCLEKANFNSSCSISQEFLLGKSFKDVLLMFVPQMITVTEVDEILCINCSEHLKAFARFIRRCIAVEEALKNAKAQEEEITQNENNRCLPDNKRLPSIPRNEIGSNMQDLREHKGHSSTYPCTSETDNQITIKEEVVEWSDTQELTLFPVQPLFDVDKFRETYSQFKSEICIQDEQVELQAQQNTIGKRKCESCDVPLSTDNSLTVATKCNRCLDGDNTQPYIIDISSNSSFEYDNDGLAPIFEEDAEKDDGDIIMQFEIMEDEQCGIQDDSRNPSPVGYHDRVITVAHTDEILSAARESTIDIYDYSTSDEKRILFFGSVFVECPKCKIKLEDGQNLEDHLRVCTPKLTKDVKEKPEVTCPICKINMYTTKMLTKHLCVAHENYKPYKCEKCGRSFRMKYTLANHVKKYEKFDSCDFRKCYFCSEMVSRENYASHSKTHTKSFVCNVCGLGFLAAHHLELHSIKHTNTKEGTREQLCPKCGKMTKHLDVHIKTHEPTNKTYMCHKCPKFFLTRSYLNKHIAYVHQDVKRFHCSDCDMSYSSSSSLSYHHKLKHAQVYPYTCEICEQGFSRVDSYKRHVDNHPAEGKRITRRKYRYSSDKTSGPVKCKYCSKLYTTVYKLRVHLLTHIKEMRYKCQICPLSFASHSNKHRHEQRHKNPYFEFSCEICWKRLETKEELEKHVIKHERSKKYKCQICDESYARQYLLNHHISEKHTDIEELEKKKEAVLTDALEEFLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -