Rmor035606.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796660.1:74863095-74864666[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.045 5.1 9.6 0.3 2 23 161 181 160 181 0.92 2 11 0.43 49 6.5 1.3 2 23 187 209 186 209 0.94 3 11 1.8 2e+02 4.5 0.6 2 23 217 239 216 239 0.94 4 11 0.00079 0.09 15.1 1.4 1 23 263 285 263 285 0.97 5 11 0.34 39 6.8 0.1 2 23 289 309 288 309 0.95 6 11 0.00011 0.012 17.8 0.6 2 23 315 337 314 337 0.93 7 11 6.3e-05 0.0071 18.5 1.0 1 23 342 365 342 365 0.97 8 11 0.00038 0.043 16.1 4.7 1 23 371 394 371 394 0.96 9 11 0.00013 0.015 17.6 6.4 1 23 400 422 400 422 0.98 10 11 1.6e-05 0.0018 20.4 0.2 1 23 428 451 428 451 0.96 11 11 7e-05 0.008 18.4 0.8 2 23 460 481 459 481 0.96
Sequence Information
- Coding Sequence
- aTGGAGAAATATAAAATGTGCCGATTATGTTTAACAAAACCGCTAGTTTCTTATTCTTTATTAGATAAAGACGGTGCCAGTATTTTGGAATCTTTAACCTCAATTAAGATAGACAAAGAAGATAATTTGCCCAAAAGGTCCTGTTTAAAATGTtggttaaatataaaattagccTATCGaatacaacaaaatattttagatgcTGATAAAGAACTTAGATCGATGAATTTTGAAGATGCGGACGATGAGGTAGTAGATAGCGAAGTTGACAATATTAAACAAGAACAATTTGAAATTATACATAAAAGTGAAGAAGATGTTGAATACAGTGAACCAGATGATACTCCAGAAACAGAATATCATAGCATTAAAGTGGAAAATTTAACGGAAGGTGAGGTGTTAATAATATGCCAATCCGATgtgaataaagaaaatatcaCGTCACTAAAAATGGACGAAATTGACAATGAGACGTCGTCTCCTTGTCATATTTGTGGCGTTGTTTTCAAAGAGAGTATTTTAATAGATCACTTAAAAACTCATTATTCCAGTAGATTGAGGTGTGACGAGTGTAACACTTATTGTGAAAATATTACTTCGTATAGAGTACACGTATTATCTAATCATAAAGATATGCAAAAGTCATGGATATGTAAAGTTTGTTGTGCATCTTTTCAATATAAACCGCTGTATAAAATACATATAGAGAAAGCTCATTTACACGACGTTGTGCAGACAAAACGAGCCAAAGAATCATTCCGGAGAATGTTAGTCGAAGAATATAAATATGATTGCCCATACTGTAACAGGAAGTTTAAAAACGAGACGAAGAGTTTGGCACACATTAAAACTCATAACAAAAAAGAATGTCCcatttgcaaaattaaaattactcctGCTAATTTCAAGGTGCATGTTGACTCGCATAGCTCACATCCAGTGGTTTGCCACCTTTGTGGTATAACATACAAAAATCCCACTTCCTTACGCAGCCATATTTACTATACACACTCGACTAGGAAGTATGTTTGTAAATACTGTAAAAAAGTTTTCAAGAAGGCATATGATCTGCCGTTACACATTAAAAAGGAACACACagGAGAGAGGGATCATGTCTGTGATATATGTGGGAAAAGCTTCTTCgcttttcataatttaaataaacataagaaAATGACGCATATGAAATTGAGGCCGTTCCAGTGCCAGTACTGCAAAAAGACTTTCTCTTCAAAACACTCTGTTAGAACTCATGAACGCCAGCATACAAATATTACGCCGTATGCCTGCGAGGTGTGCGGAGAAGGCTTTAGGCAGAATGTTTCGCTAAAGGCTCATAAAAAATCGAAACATAATATAGTGGAGGCTAAAACTTGCGAGTGCAAGGTTTGTGGGAAGAAGTTTGGATCGCGATGGGCTGTACTGAGTCATATGCGGATACACTaa
- Protein Sequence
- MEKYKMCRLCLTKPLVSYSLLDKDGASILESLTSIKIDKEDNLPKRSCLKCWLNIKLAYRIQQNILDADKELRSMNFEDADDEVVDSEVDNIKQEQFEIIHKSEEDVEYSEPDDTPETEYHSIKVENLTEGEVLIICQSDVNKENITSLKMDEIDNETSSPCHICGVVFKESILIDHLKTHYSSRLRCDECNTYCENITSYRVHVLSNHKDMQKSWICKVCCASFQYKPLYKIHIEKAHLHDVVQTKRAKESFRRMLVEEYKYDCPYCNRKFKNETKSLAHIKTHNKKECPICKIKITPANFKVHVDSHSSHPVVCHLCGITYKNPTSLRSHIYYTHSTRKYVCKYCKKVFKKAYDLPLHIKKEHTGERDHVCDICGKSFFAFHNLNKHKKMTHMKLRPFQCQYCKKTFSSKHSVRTHERQHTNITPYACEVCGEGFRQNVSLKAHKKSKHNIVEAKTCECKVCGKKFGSRWAVLSHMRIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01370146;
- 90% Identity
- -
- 80% Identity
- -