Rmor046414.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:1613213-1619379[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 3 3.4e+02 3.8 1.9 1 23 364 387 364 387 0.94
2 13 1.8e-05 0.002 20.3 2.7 1 23 396 418 396 418 0.99
3 13 2.2e-05 0.0025 19.9 4.3 1 23 427 449 427 449 0.99
4 13 0.006 0.68 12.3 5.4 1 23 458 480 458 480 0.99
5 13 0.087 9.9 8.6 3.3 1 23 489 511 489 511 0.98
6 13 1e-05 0.0012 21.0 1.5 1 23 520 542 520 542 0.99
7 13 3.8e-06 0.00043 22.4 0.9 1 23 551 573 551 573 0.99
8 13 0.00012 0.014 17.6 4.7 1 23 582 604 582 604 0.99
9 13 0.006 0.68 12.3 5.4 1 23 613 635 613 635 0.99
10 13 5.1e-05 0.0058 18.8 1.1 1 23 644 666 644 666 0.99
11 13 1.2e-05 0.0014 20.8 3.0 1 23 675 697 675 697 0.99
12 13 0.00063 0.072 15.4 2.3 1 23 706 728 706 728 0.98
13 13 1.1 1.3e+02 5.1 0.3 13 23 749 759 740 759 0.80

Sequence Information

Coding Sequence
ATGGGAAATCTCCGAATAGTGGTATGCAGGCTTTGCTTGAAGAAATGTgtcgattttgaatttgaagcTGTACAAGACTATACGAAAGATTTGTTGGAAGTACTTTTACTGAAAATAAATCTGGCCATTAGTGAGCAACCCGTCATGTGTACAAGCTGTGCTTCAAGACTGATGagatgttttgattttaaagcCATGTGTTTTTACACTCATGATTATATAGTTCCGTTTCTCGATGATAACATTTCGAAGCTGGATCTAAAAAAAGTCTATATgagcaaatataaatatgataaTGTCGATATTCCTGAGGATCACACCGTATGCGGATTTTGCATGGGACTACTCGAGAAGTATACGGCTGTATCCTTGGATAGTGAAGAGGGAGGCATTAAGTTGCAAACATTAATACAGAAATGTCTTCCCGAATTGGATTTAAGCACCATCGAGGAACCAATGATCTGCGCATCCTGTTATGGATCCTTAAAGACTTGCTCCCACTTTGTAACCAGCTGCTTAATTGTAGAAGAGGAGATTATGGAATATTGCAAATTAACAGGCGCAGACGTTATAGAAATCGCAGACGTACTACAGTCGACGTCGGTACATGCATCGAGCGTAGAAGGAGATGGTAATACGATTGACAGTacagaagaaaaattttgtgtCGATATGGGCAACATGGAGGAACAAAAGCATGTTGAAATAAAAGCGGATCAACATGGTTTTGACaaATGTTCAGATGGTGTTATTTCATCACAACCAGTTACTACTAAGTTACGTGGAAGACTAGAATGTTCAGTGTTAAAAAGAGGTCCATTAAGAACTACCAGTAAACACAGATTGGcacatgaaaaatatttggaaaatctTAAACGACATCGAGGACTGCATGTGAATcctacagaaataaaaacgtACTGCTGTGACTGCTGTTCTTATCGGACAAAATACAGAAAGTGTTTTAAAAGACATTCTCTAAAGCACAAGAATCCATCGGGGGTACTAATATACCGGTCTAAGTCCTATTCACGGCAAACAAAGAATCGACGTAGTCTTATCAATAAGAACACCTCAGAAATAATACACTACCAGTGTGGTTCTTGTTCTTTTCAGACGAAACTTAAAAGTGGGATCCAACACCACATGTTGGACACCCACAAACTCTCCTCAAACACGACGATGTATCAGTGTGATATTTGtgagtataaaacaaaatttaaacgaaACCTACAAAGACATATGTTGACACATAAAGACCGCTCAGAAATAGAAATGTACCAGTGTGATATTTGTGAGTTTAAGACAAAACATAAAAGTAGCCTGAGGAGACATATGTTGACCCATAAAGATCagtcagaaataaaaatgtaccaGTGTGATATTTGTAAGTTGAAGACAAAATGTAAAAGAAACCTGAAAAGACATATGTTGACCCATAAAGATCagtcagaaataaaaatgcaCCAGTGTAATAATTGTGGGTTTCAAACAAAACATAAACAAGGCCTGCCAATACATATGTTGACCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGCGATATTTGTGGGTTTAAGACAAAACTTAAACGAAACCTACAAAGACATATGATAACACATAAAGACCGGTCAGAAATAGAAATGTACCAGTGTGATATTTGTGGGTTTAAGACAAAACGTAAACCAAACCTACAAATGCATATGTTGACACATAAAGACCAGTCAGAAATAGAAAAGTACCAGTGTGATATTTGTGAGTTTAAGACAAAACATAAAAGAAGCCTGAGGAGACATATGTTGACCCATAAAGATCagtcagaaataaaaatgtaccaGTGTGATATTTGTAAGTTGAAGACAAAATGTAAAAGAAACCTGAAAAGACATATGTTGACCCATAAAGATCagtcagaaataaaaatgtaccaGTGTGCGATTTGTCCATTTAAGACAAAATATAAACGTAACCTCCAAGTACATATGCTGACCCATAAAGATCAGTCAGAAGTAGAAATGTACCAATGTGATTTTTGTGGGTTTAAAACAAAACGTAAAGAGTACCTGCAAAGACATATGTTGACCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGTGCGTCTTGTCCATTTAAGACAAAACATAAAGAGAGCCTGCAAAGGCATATGTTGATCCATAAAGAccagttagaaatagaaatgcaCCAGCGTGATATTTGTGAGTTGAAGACAGAATGTAAAGAAAGCCTGCAAAGGCATATGTTGACCCATACAGATCACTCAGCAATAGAAATCCACCAGCGTGATATTTGTGAGTTGAAGACAGAATGTAAAGATTTTGAAACAGAACATAAATATAGCCTGGTTGAACATACGGTGACCCATAAGAACGACTCAGAAATAGAAATACACCAGTGTGTCTCTTGTTCATATCAGACGAAGTATGAAAGTTGCATGCAAGAGCACATGTTTACCCACAAACTCCCCGCAGAAACAACGGGCTAG
Protein Sequence
MGNLRIVVCRLCLKKCVDFEFEAVQDYTKDLLEVLLLKINLAISEQPVMCTSCASRLMRCFDFKAMCFYTHDYIVPFLDDNISKLDLKKVYMSKYKYDNVDIPEDHTVCGFCMGLLEKYTAVSLDSEEGGIKLQTLIQKCLPELDLSTIEEPMICASCYGSLKTCSHFVTSCLIVEEEIMEYCKLTGADVIEIADVLQSTSVHASSVEGDGNTIDSTEEKFCVDMGNMEEQKHVEIKADQHGFDKCSDGVISSQPVTTKLRGRLECSVLKRGPLRTTSKHRLAHEKYLENLKRHRGLHVNPTEIKTYCCDCCSYRTKYRKCFKRHSLKHKNPSGVLIYRSKSYSRQTKNRRSLINKNTSEIIHYQCGSCSFQTKLKSGIQHHMLDTHKLSSNTTMYQCDICEYKTKFKRNLQRHMLTHKDRSEIEMYQCDICEFKTKHKSSLRRHMLTHKDQSEIKMYQCDICKLKTKCKRNLKRHMLTHKDQSEIKMHQCNNCGFQTKHKQGLPIHMLTHKDHSEIEMYQCDICGFKTKLKRNLQRHMITHKDRSEIEMYQCDICGFKTKRKPNLQMHMLTHKDQSEIEKYQCDICEFKTKHKRSLRRHMLTHKDQSEIKMYQCDICKLKTKCKRNLKRHMLTHKDQSEIKMYQCAICPFKTKYKRNLQVHMLTHKDQSEVEMYQCDFCGFKTKRKEYLQRHMLTHKDHSEIEMYQCASCPFKTKHKESLQRHMLIHKDQLEIEMHQRDICELKTECKESLQRHMLTHTDHSAIEIHQRDICELKTECKDFETEHKYSLVEHTVTHKNDSEIEIHQCVSCSYQTKYESCMQEHMFTHKLPAETTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-