Rmor046390.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:1473599-1479031[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00031 0.035 16.4 1.0 1 23 392 414 392 414 0.99
2 17 0.54 61 6.2 0.6 1 23 423 445 423 445 0.98
3 17 0.0015 0.17 14.2 0.8 1 23 454 476 454 476 0.99
4 17 0.036 4.1 9.9 1.4 1 23 483 505 483 505 0.98
5 17 0.00018 0.021 17.1 4.3 1 23 514 536 514 536 0.99
6 17 0.002 0.22 13.8 0.8 1 23 543 565 543 565 0.98
7 17 0.007 0.8 12.1 2.0 1 23 574 596 574 596 0.99
8 17 0.17 19 7.7 6.5 1 23 605 627 605 627 0.98
9 17 0.0013 0.15 14.4 1.1 1 23 636 658 636 658 0.98
10 17 0.0035 0.4 13.0 2.2 1 23 667 689 667 689 0.98
11 17 4e-06 0.00046 22.3 0.9 1 23 698 720 698 720 0.99
12 17 0.0052 0.59 12.5 0.9 1 23 729 751 729 751 0.99
13 17 0.0004 0.045 16.0 6.1 1 23 760 782 760 782 0.99
14 17 1.5e-05 0.0017 20.5 0.6 1 23 791 813 791 813 0.98
15 17 0.14 16 8.0 5.3 2 23 854 875 853 875 0.97
16 17 0.48 54 6.3 0.3 13 23 896 906 887 906 0.79
17 17 0.49 55 6.3 5.3 2 23 916 937 915 937 0.95

Sequence Information

Coding Sequence
atgatttgccgactttgccttcaaacaattgGTAATAATGATTGTCAACCGGTTGAAGAATCTTTGTTGAAATTCTTAAAattgaatataaatatatctaagGAAAATGTGATGTGCGTTGAATGTGCCAGTTGCCTTCAGACATTATCAAATTTCACGCCAGGCTGTGCTTATGTGGGGGACGAGACGTTGCCTTTATCTGATCTCAAAAATGGCATCAAGTTGGAAACAGAACCGAGCGAAACTACAAACAATCCAAAGTCCTTTCTGAAAAcggaaataaaatgcagtttttgtacaaagGCTCATGGAAGAGAAGATCTCATATCTTTGCAGGTTTCAAGAGAAAACAAGTTTTTGCTGGAGCAATACATTTTGGAGACGaatttaaaaaacactgaATGGCTCTTAACCTGCAAAACTTGTTTTGAGCCCCTGGAAGGCGTTTTGAGTATTATTTCGAAGTGTTTAGAGGTGGAGGAAAAGATAAGTcaatatattgaattaaagGGAACGGATGATAAAGGTCAAGTAGAACTAAGGAAAGTACAACAATTTGTGttcaaaccaattttaaaatcgGAAATTGAGTCGTGTGGCGTGAATGAATTAGAAGATAGATCCGATCAACTTCAAGGAGAATATACTTCGATGGGTGAAGTCGAAATGAAATACGAAAAAGGAGTACGTAACACAGAGTTGGTTATTAAGACGGATGAGGATGATATCACTTCGGAACAAGGCGATTGTGATATCCGCGATATCAAATCAGAGCAGCACAGTGAAGTAGAAGGAGATGGTAATACGATTGACAGTATCAATacagaagaaaaattttgtgtCGGTATGGGCACCGCTGACGAACAGGTTGGGCATGAAAACGGTAGTTTTGGCAACATGGAGGAACAAAAGCATGTTGAAATAAAATCGGATCAACATGGTTTTGAGGGATGTTCAGATGGTGTTATTTCATCACAACCAGTTACTACTAAGTTACGTGGAAAACGAGAATGTTCAGTGTTAAAGAGAGGTCCATTAAGAACTACCGATAAACACAAACTggcatacaaaaaatatttagaaaatcttAAAAGACATCGAGAACTTCATGTGAattctacagaaataaaaacgtATAGTCCTATCAATAAGAgcacctcagaaataaaaatgtaccaGTGTGATATTTGTGGGTTTCAAACAAAACGTAAACGAAACCTGCCAAGCCATATGTTGACCCATAAAGACCACTCAGAAATAGAAATGTATCAGTGTGCGGCTTGTCCATTTAAGACAAAATATAAACGAAGCCTGCCCTTGCATATGTTGACCCATAAAGATCTCTCAGAAATAGAATTTTATCAGTGTGATTCTTGTGAGTTTAAGACGAAACGTAAAGATGGCCTGCAAGGACATATGATTACCCATAAAGATCAGTCAGAAATATACCAGTGTGTGGCTTGTCCATTTAacacaaaatttaaagaaagcCTGCAAAGACATAAGTTGACCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGTACGGCTTGTCCATTTAagacaaaacataaatataaccTGCAGAGACATATGTTGACCCATGAAGATCACTCAGAAATATACCAGTGTGCGGCTTGTCCATTTAacacaaaatttaaagaaagcTTGCAAAGACATATGTTGACCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGTGCGGCTTGTCCATTTAagacaaaatataaacataacctGCAAGGACATATGCTGACCCATAAAGACCCTTCAGAAATAACAATGTACCATTGCGAGTCTTGTACTTTTAAGACGAAACGCAAACATAGCCTGGATAAACATATGTTGGTCCATAAAGAcccttcagaaataaaaatgtaccaGTGTGCGGTTTGTCCATTTAAGACGAAACATAATAAAAGCCTCCTTGTACATATGTTGATCCATAAAGACCCGGCAAAAATAGAAATGTACCAGTGTGTGGCTTGTCCATTTAagacaaaacataaatataaccTGCAAGGACATATGCTGACCCATAAGGACCTCTCAGAAATAGAAATGTACCAGTGTGATATTTGTGGGTTAAAGATAAAACGTAAACGAGACCTGCAAAAACATATGTTGACCCATAAAGACCACTCAGAAATACAAATGTACCAGTGTGCGGCTTGTCCATTTAAGACGAAATATAAACGAAACCTGCAAGGACATATGTTGACCCATAAAGATGTCTCAGAAATAGAATTGTATAAGTGTGATTTTTGTGAGTTTAAGACGAAACATAAAGAAAGCCTGCAAAGACATATGAAGACCCATAAAGATCagtcagaaataaaaatgtaccaGTGTGATGTTTGTGGGTTAAAGACAAAACGTAAACAAGACCTGCAAAAACATATATCGGTCCATAAAGACCACTCAGAAGTAGAAATGTATCAGTGTGTTTCTTGTTCATATCAGACGaaacataaaaattgcattcGAAAGCATGTACTAACCCACAACCTCTCCGCAGAAATAACGATGTGCCAGTGTAACATTTGTAATTTGAAGACAGAATGTAAGGAAAGCCTGCAAAGGCATATGTTGACCCATAAAGATCACTCAGAAATAGAAATGCATCAGCATGATATTTGTGAGTTGAAGACGGAATGTAAAGAAAACCTGCAAAGACATATGTTGACCCATACAGATCACTCAGAAATAGAAATGTGCCACTGTGATTCTTGCGATTTTGAAACAGAACATAAATATAGCCTGGTTGAACATATGTTGACCCATAAGGACGACTCAGAAAtagaaatacagggtgtttactaa
Protein Sequence
MICRLCLQTIGNNDCQPVEESLLKFLKLNINISKENVMCVECASCLQTLSNFTPGCAYVGDETLPLSDLKNGIKLETEPSETTNNPKSFLKTEIKCSFCTKAHGREDLISLQVSRENKFLLEQYILETNLKNTEWLLTCKTCFEPLEGVLSIISKCLEVEEKISQYIELKGTDDKGQVELRKVQQFVFKPILKSEIESCGVNELEDRSDQLQGEYTSMGEVEMKYEKGVRNTELVIKTDEDDITSEQGDCDIRDIKSEQHSEVEGDGNTIDSINTEEKFCVGMGTADEQVGHENGSFGNMEEQKHVEIKSDQHGFEGCSDGVISSQPVTTKLRGKRECSVLKRGPLRTTDKHKLAYKKYLENLKRHRELHVNSTEIKTYSPINKSTSEIKMYQCDICGFQTKRKRNLPSHMLTHKDHSEIEMYQCAACPFKTKYKRSLPLHMLTHKDLSEIEFYQCDSCEFKTKRKDGLQGHMITHKDQSEIYQCVACPFNTKFKESLQRHKLTHKDHSEIEMYQCTACPFKTKHKYNLQRHMLTHEDHSEIYQCAACPFNTKFKESLQRHMLTHKDHSEIEMYQCAACPFKTKYKHNLQGHMLTHKDPSEITMYHCESCTFKTKRKHSLDKHMLVHKDPSEIKMYQCAVCPFKTKHNKSLLVHMLIHKDPAKIEMYQCVACPFKTKHKYNLQGHMLTHKDLSEIEMYQCDICGLKIKRKRDLQKHMLTHKDHSEIQMYQCAACPFKTKYKRNLQGHMLTHKDVSEIELYKCDFCEFKTKHKESLQRHMKTHKDQSEIKMYQCDVCGLKTKRKQDLQKHISVHKDHSEVEMYQCVSCSYQTKHKNCIRKHVLTHNLSAEITMCQCNICNLKTECKESLQRHMLTHKDHSEIEMHQHDICELKTECKENLQRHMLTHTDHSEIEMCHCDSCDFETEHKYSLVEHMLTHKDDSEIEIQGVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-