Rmor046504.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:2082063-2084942[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0031 0.35 13.2 2.7 1 23 301 323 301 323 0.98
2 15 0.22 26 7.3 5.2 1 23 332 354 332 354 0.98
3 15 0.04 4.5 9.7 0.3 1 23 363 385 363 385 0.97
4 15 0.00086 0.098 15.0 2.8 1 23 394 416 394 416 0.99
5 15 0.00031 0.036 16.3 2.7 1 23 425 447 425 447 0.99
6 15 0.012 1.4 11.3 4.3 1 23 456 478 456 478 0.98
7 15 0.0036 0.41 13.0 2.2 1 23 488 510 488 510 0.97
8 15 0.00019 0.022 17.0 2.5 1 23 519 541 519 541 0.99
9 15 0.00022 0.025 16.8 2.6 1 23 550 572 550 572 0.99
10 15 0.047 5.4 9.5 6.6 1 23 581 603 581 603 0.98
11 15 0.017 1.9 10.9 0.2 1 23 617 639 617 639 0.97
12 15 0.00086 0.098 15.0 2.8 1 23 648 670 648 670 0.99
13 15 0.00031 0.036 16.3 2.7 1 23 679 701 679 701 0.99
14 15 0.0041 0.47 12.8 8.3 1 23 710 732 710 732 0.98
15 15 0.0015 0.17 14.2 3.1 1 23 739 761 739 761 0.99

Sequence Information

Coding Sequence
atggaaaaaatccaAAGATTAATATGCAGGCTTTGCTTGCAGAAACGTATCGATTTGCAAGCTGTAGAAGCCCACATGAAAGATGTGTTGGATATACTTTTGCTGAAAATAaatctAGCCGTTAGTGAGGATCCCGTCGTGTGTACAGATTGTGCTGCAATGCTAATGAGATGTTTTGAGTTTAAAGCGACGTGTTTTTACACCCAGGATTATATTGTTCCGTTTCTCGAAGATGACAAAATTTCGAAACTGGATCTAAGGAAACTCTATATGAACAAATATGAAAATGTCAATATTCCTGATGATCATGGCGTATGTGGGTTGTGCATGGGACTAGCCGAAAAATGTACGGCTGTATGCTTGGATAATGATGGAGACGTGTCGGAGAAGTTGATAGAAAAATGTCTTCCCGAATTGGATTTAAGCACCATCTACGAACCGATAATCTGTGCGGCCTGCTGTGAATCGTTAAAGACCTGTTTCCATTTTGTAACAAGCTGCTTAATTGTGGAAGAAAAGGTAATGGAGTACCGTAAATTAACGGGCGCAGACATTATAGAAATTGCAGACGTACTACAATTGACATGCGGAAATGTGAAAGTGGAAGAAGACGGTACTGCAATTGACGTCACCACTACAGATGGAACATTTTGTGTCGATATGGGAAACGGTGAGGGACACAAAAATGTGCACGTGGaggaacaaaaatttttaccaaacgaagatattgaaataaagacagatcaACATGACTTTGacagatgtttggATAATGTCGTTTTACCACAACCAATTACTACTACGTGGCGtggaagaaaaaaatgtttaatgtcAGAAGAAGGTTCATCAAAACCTTCCAATAAACACAAAAGGGCACATAACGTTTCACAAACAACAGTCTACCAGTGTGATTCTTGTTCATTTCACACGAAGCTTAAAGGGAACTTGCAAAGGCATATGTTAATCCACAATATTTCTTCAGAAACAACAATGTACCAGTGCCATTCTTGTTCTTTCAAGACAAAACATAAACGTAACCTACCTGTGCATATGTTAATCCATAAAGACCCTTCGGAAGTAACAATGTATCAGTGTACGTCATGTCCATATAAGGCAATATATAAGAGTTTACTTGAACAGCACTCTTTGATCCATAAGGCACCCTCTGAAATAAAGCAGTACCAGTGTGATGCCTGTTCATATCACACGAAGTATAAAGGGAACCTTCGAAACCACATGATAACCCACAGACTGCCTTCAGAAACAACAATCTACCGGTGTGATTCTTGTTCATTTCAATCAAAACGTAAAGGGAACCTTCGAAAGCATATGTTAACCCACAAACTCTCTTCAGAAATAACAATGTACCAGTGCCATTCTTGTTCTTTCAAGACAAAACGTAAACAAAGCCTACGTGGACATATGTTAATCCATAATAAAGACCCTTCGGAAGTAACAATGTATCAGTGTACGTCTTGTCCATATCAGACAAAACAAAAGAATCAACTTAAAAAGCACTCTTTAATCCATAAAGAACCCTCGGAAATAAGATGGTACCAGTGTGATGCCTGTTCATATCACACGAAGCGTAAAGGGAACCTTCAAAACCACATGATAACCCACAGACTGCCTTCAGAAACAACAATCTACCGGTGTGATTCTTGTTCATTTCAATCAAAACGTAAAGGGAACCTTCGAAGGCATATGTTAACCCACAAACTCTCTTCAGAAACAACAATGTACCACTGCCATTCTTGTTCTTTCAAGACAAAACGTAAACAAAGCCTACGTGTACATATGTTAATCCATAATAAAGACCGAAGGGTCTTCCGAAGGGAAGTAACAATGTATCAATGTCCGTCATGTCCATATAAGGCAATATATAAGAGTTTACTTGAACAACACTCTTTGATCCATAAGGCACCCTCTGAAATAAAGCAGTACCAGTGTGATGCCTGTTCATATCACACGAAGTATAAAGGGAACCTTCGAAACCACATGATAACCCACAGACTGCCTTCAGAAACAACAATCTACCGGTGTGATTCTTGTTCATTTCAATCAAAACGTAAAGGGAACCTTCGAAAGCATATGTTAACCCACAAACTCTCTTCAGAAACAACAATGTACCAGTGTCATTCTTGTTCTTACAAgacaaaacataaacataacctAGCTAAGCATATGTTAATCCATAATGACAAAATAAGACGGTACCAGTGTGATGTCTGTTCATTTCACTCAAAGTATAAAGGGAGCCTTCAAAGGCATCTGTTAACCCACAAACTCAGCCACGGAACAACAGGGTAG
Protein Sequence
MEKIQRLICRLCLQKRIDLQAVEAHMKDVLDILLLKINLAVSEDPVVCTDCAAMLMRCFEFKATCFYTQDYIVPFLEDDKISKLDLRKLYMNKYENVNIPDDHGVCGLCMGLAEKCTAVCLDNDGDVSEKLIEKCLPELDLSTIYEPIICAACCESLKTCFHFVTSCLIVEEKVMEYRKLTGADIIEIADVLQLTCGNVKVEEDGTAIDVTTTDGTFCVDMGNGEGHKNVHVEEQKFLPNEDIEIKTDQHDFDRCLDNVVLPQPITTTWRGRKKCLMSEEGSSKPSNKHKRAHNVSQTTVYQCDSCSFHTKLKGNLQRHMLIHNISSETTMYQCHSCSFKTKHKRNLPVHMLIHKDPSEVTMYQCTSCPYKAIYKSLLEQHSLIHKAPSEIKQYQCDACSYHTKYKGNLRNHMITHRLPSETTIYRCDSCSFQSKRKGNLRKHMLTHKLSSEITMYQCHSCSFKTKRKQSLRGHMLIHNKDPSEVTMYQCTSCPYQTKQKNQLKKHSLIHKEPSEIRWYQCDACSYHTKRKGNLQNHMITHRLPSETTIYRCDSCSFQSKRKGNLRRHMLTHKLSSETTMYHCHSCSFKTKRKQSLRVHMLIHNKDRRVFRREVTMYQCPSCPYKAIYKSLLEQHSLIHKAPSEIKQYQCDACSYHTKYKGNLRNHMITHRLPSETTIYRCDSCSFQSKRKGNLRKHMLTHKLSSETTMYQCHSCSYKTKHKHNLAKHMLIHNDKIRRYQCDVCSFHSKYKGSLQRHLLTHKLSHGTTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-