Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796663.1:51093306-51095688[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0059 0.67 12.3 0.7 1 23 211 233 211 233 0.96

2 11 0.036 4.1 9.9 0.1 3 23 238 258 237 258 0.97

3 11 0.00043 0.049 15.9 0.9 1 23 262 284 262 284 0.96

4 11 0.00025 0.028 16.7 4.5 1 23 290 312 290 312 0.97

5 11 0.0001 0.011 17.9 0.6 1 23 318 341 318 341 0.97

6 11 1.5e-07 1.7e-05 26.8 0.4 1 23 347 370 347 370 0.98

7 11 0.00015 0.017 17.4 1.7 1 23 376 398 376 398 0.98

8 11 0.00059 0.067 15.5 2.4 3 23 440 460 439 460 0.98

9 11 0.21 24 7.4 2.4 1 23 466 488 466 488 0.95

10 11 0.0043 0.48 12.8 0.2 1 23 496 518 496 518 0.95

11 11 0.01 1.2 11.5 1.7 1 23 524 547 524 547 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0059	0.67	12.3	0.7	1	23	211	233	211	233	0.96
2	11	0.036	4.1	9.9	0.1	3	23	238	258	237	258	0.97
3	11	0.00043	0.049	15.9	0.9	1	23	262	284	262	284	0.96
4	11	0.00025	0.028	16.7	4.5	1	23	290	312	290	312	0.97
5	11	0.0001	0.011	17.9	0.6	1	23	318	341	318	341	0.97
6	11	1.5e-07	1.7e-05	26.8	0.4	1	23	347	370	347	370	0.98
7	11	0.00015	0.017	17.4	1.7	1	23	376	398	376	398	0.98
8	11	0.00059	0.067	15.5	2.4	3	23	440	460	439	460	0.98
9	11	0.21	24	7.4	2.4	1	23	466	488	466	488	0.95
10	11	0.0043	0.48	12.8	0.2	1	23	496	518	496	518	0.95
11	11	0.01	1.2	11.5	1.7	1	23	524	547	524	547	0.96

Sequence Information

Coding Sequence: ATGTTTGTTTCTCCGCAAAAGACTGTATCACAAACAGTGATAAACGAAATTTCTGCAAAAGACTCTAAAGAAGCCTTTTTCATCAATTTTAAAGACAGTACCGGTACATTTTGGAATAATACAGAAATCCAGGAAATCCTGCCAAAATCCTGCGTGGGAATTGTCAGCTCGGAAGTAAATATATCGTTACAACTAGTAAATCAAATGTCTTCAGaagacGTTACAGAAGTTGCTTTAAAACACATCAACCACGACCATGACTATACGAAAAACGATGGTCCTCAAAAACTTCACGAAGACAatggaaacatatttttaacTCTGAATTTAACCGAATATAGTAAAATGATAGACGTAGGAAGTATTGGCGGTATcgttttacttttaaataacCAATCGCAACATATAGGAGGGAACAACGCCGACACAAATGAAGCCAGTGGAAGTGCTAACGGAGCTGATCCAAATGCGAATAAACTTGTTTCGGTAAATGAAGATGGAAGCGTAAACGTAAAATTCAAGCGTTACATCAGGTGCGAATTTTGCAAGGATGATTTTGAGATGGTACGCAAGTACAAGAATCATTTAAAGGAAAAGCATAAAACCGCACTATATAACATGTGCAAGCCTTATTTTTGTGAACCGTGCGATAAAGAATTCACCAACAAGGATATTTTTCTGAAACATCTGCGTGTACATGGAGGGATCCTTTGCAACGTTTGCGCAGAAAGttttgATTCAAGAGAGGCTTTTGCAGCCCACGAGAAAAACCACCCCAATAAATATTTCTGTGAGGTATGCAGCAAAGGGTTTAGAGAGAAGCATTCTTTGAAAGTTCACGCGGCCGTTCACAATGATTTGTATTCATTCTTTTGCAACGTGTGTCATCAAGGGTTTAAAGCTAGGGGCAATTTAACGCACCACATGATGCGacataacaaaatcaaaaaatttatgtGTGATAAATGCCCCTACATGTTCTACAATGAAAGCAGACTTTTGAACCATCAGCGAGTGGTTCATGACAAATTGAAGCCGTTCCAGTGTCCCGACTGTGATAAGAAATTCGCCGGAAAAAGCAATCTATACATACATCAAAGAGTAATGCATTTGAAATTGAAGCCGCACCAATGTGAGTTTTGTGGAAGGCAGTTTGCAAAGACGGATGCGTTGTCAAATCACAGGCGTATTCACACTGGGACACCAAGGAGACCGAGTCGGCATAAACGAAATGCTGAAAAATCTGCCAGTAGACAACATAAAGAAAATAGTGGCGTGCCAATTATTCCTACTAAGCTCAATAATACACCAGTGGATTGTGACATTTGCGGAAGAACTCTTAAAAATTTGACGTTTTTAAAACATCACTTAAATACCCATGCCAgaataagaaaatttaaatgtgACATCTGTGGGCTGATGTTCTTGCATCGAACGACGAAGATTCAGCATGAAAAGTCACATGCCGCAGACCCTGAACATAAATTTGTTTGTCCTGTTTGCTGGAAGAGAAGTAAAACCAAAGAAGAACTGGACCTGCACGCCAGTCAACATAATAGACTAGGGAGACACAAATGTGAAGTTTGTGGAGACTCATTTTGTCGTAGGATATTATTAGATAACCATGTACTTTCAGAACATACAAAGGAAGAAGAAATCAGTAAGAAAGAACGGGAGATTATTGTAGATGGCATTCTACAAGCCGTGAATAAATTGTAA
Protein Sequence: MFVSPQKTVSQTVINEISAKDSKEAFFINFKDSTGTFWNNTEIQEILPKSCVGIVSSEVNISLQLVNQMSSEDVTEVALKHINHDHDYTKNDGPQKLHEDNGNIFLTLNLTEYSKMIDVGSIGGIVLLLNNQSQHIGGNNADTNEASGSANGADPNANKLVSVNEDGSVNVKFKRYIRCEFCKDDFEMVRKYKNHLKEKHKTALYNMCKPYFCEPCDKEFTNKDIFLKHLRVHGGILCNVCAESFDSREAFAAHEKNHPNKYFCEVCSKGFREKHSLKVHAAVHNDLYSFFCNVCHQGFKARGNLTHHMMRHNKIKKFMCDKCPYMFYNESRLLNHQRVVHDKLKPFQCPDCDKKFAGKSNLYIHQRVMHLKLKPHQCEFCGRQFAKTDALSNHRRIHTGTPRRPSRHKRNAEKSASRQHKENSGVPIIPTKLNNTPVDCDICGRTLKNLTFLKHHLNTHARIRKFKCDICGLMFLHRTTKIQHEKSHAADPEHKFVCPVCWKRSKTKEELDLHASQHNRLGRHKCEVCGDSFCRRILLDNHVLSEHTKEEEISKKEREIIVDGILQAVNKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -