Rmor047072.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:6528241-6535708[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.7 1.9e+02 4.6 2.6 1 23 378 400 378 400 0.98
2 16 8.6e-05 0.0098 18.1 4.1 1 23 409 431 409 431 0.99
3 16 0.00046 0.052 15.8 2.3 1 23 440 462 440 462 0.99
4 16 0.0009 0.1 14.9 3.2 1 23 471 493 471 493 0.99
5 16 5.2e-06 0.00059 21.9 1.5 1 23 502 524 502 524 0.99
6 16 0.16 18 7.8 4.9 1 23 533 555 533 555 0.98
7 16 0.017 1.9 10.9 1.8 2 23 565 586 564 586 0.97
8 16 0.00031 0.036 16.3 4.2 1 23 595 617 595 617 0.97
9 16 0.029 3.3 10.1 2.7 1 23 626 648 626 648 0.97
10 16 1.2e-05 0.0013 20.8 1.0 1 23 657 679 657 679 0.99
11 16 0.00043 0.049 15.9 3.9 1 23 688 710 688 710 0.98
12 16 0.056 6.4 9.2 3.7 1 23 719 741 719 741 0.98
13 16 4e-05 0.0046 19.1 1.4 1 23 750 772 750 772 0.99
14 16 7.6e-05 0.0086 18.3 3.7 1 23 781 803 781 803 0.98
15 16 0.66 75 5.9 0.2 13 23 824 834 815 834 0.79
16 16 0.23 26 7.3 1.0 1 23 843 865 843 865 0.98

Sequence Information

Coding Sequence
ATGGGAAATCTTCGGAGAGTAATATGCAGGCTTTGCTTGAAGAAATGCgtcgattttaattttgaagCCGTACAAGACTATACGAAAGATGTGTTGGAAGTACTTTTACTGAAAATAAATCTGACCATTAGTGAGGAACCCGTTATGTGTACAAGCTGTGCTTCAAGACTGATGGgatgttttgattttaaagcgATGTGTTTTTACACTCATGATTATATATTTCCGTTTCTCGATGATAACGTTTCGAAGCTGGATCTTAAAAAAGTCTATATGAGCAAATATGAAAAAGTCGATATACCTGAGGATTACAGCGTGTGCGGATTTTGCATGGGACTACTCGAGAAGTATACGGCTGTATCCTTGGATAGTGAAGAGGAAGGCGTTAAGTTGCAAAAATTAATTGAGAAATGTCTTCCCGAATTGGATTTAAGCACCATCGAGGAACCAATGATCTGTGCATCCTGTTATGAATCCTTAAAGACTTGTTTCCATTTTGTAACCAGCTGCTTAATTGTAGAAGAAGAGATTATGGAGTATTGCAAATTAACAGGTGCAGACGTTATAGAAATCGCAGACGTACTACAGTCGACGTCGATACATGCGTCGAGCGTAGAAGGAGATGGTAATACGATTGACAGTATCAGTacagaagaaaaattttgtgtCGATATGGGCAACGCTGACGAACAGGTTGGACACGAAAATGGCAGTTTTGGCAACATGGAGGAACAAAAGCATGTTGAAATAAAAGCGGATCAACATGGTTTTGACAGATGTTCAGATGGTGTTATTTCATCACAACCAGTTACTACTAAGTTACGTGGAAAACGAGAATGTTCAGTGTTAAAAAAAGGTTCATTAAGAACTACCAGTAAACACAAACTGgcacacaaaaaatatttagaaaatcttAAAAGACATCGAGAACTTCATGTGAATcctacagaaataaaaacgtACTGCTGCGACTGCTGTTCTTATCGGACAAAATACAGAAAGTGTTTTAAAAGCCATTCTCTAAAGCACAAGAGTCCATCGGGGGTACTAATATACCGGTCTAAGTCCTGTTCACGACAAACAAAGTATCGACGTAGTCTTATCAATAAGAGCACCTCAGAAATAACAATCTACCAGTGTGGTTCTTGTTCATTTCAGACGAAACTTAAAACTGGGATCCAACACCACATGTTAACCCACATACTCTCCGCAAACACGACGATGTATCAGTGTGATATTTGTGAgtttaaaacaaaacataaacgAAACCTTCAACAACATATGTTGACACATAAAGACCGCTCAGAAATAGAAATGTACCAGTGTGATATTTGTGAGTTTAAGACAAAACGTAAACATGGCCTGCAAGGACATATGCTGACCCATAAAGATCTCTCGGACATAGAATTGTATCAGTGTGATTCTTGTGAGTTTAAGGCGAAACATAAAGAAAGCCTGCAGAGACATATGATGACCCATAAAGAtcagtcaaaaataaaattgtaccaGTGTAATATTTGCGGGttaaagataaaatataaaCGAAACCTGCAAAAACATATGTTGACCCATAAAGACCActcagaaatagaaatgttccAGTGTGCGGCTTGTACATTTAAGACAAGACATAAACATAGCCTGCAAGGACATATGCTGACCCATAAAGACCTCTCAGAAATAGAAATGGTCCGGTGTGATATTTGTGGCGTAAAGGTAAAATGTAAACAATACCTGCAAAAACATATGCTGACCCATAAAGACCACTCAGAAGTAAAAATGCACCAGTGTAGTTATTGTGAGTTTAAGACAAAACGTAAATATGACCTGCAAAGACATATGTTGGCCCATAAAGATaagtcagaaataaaaatgcaCCAGTGTGATATTTGTGAgtttaaaacaaaacataaagaCAGTCTGCCAAGACATATATTGATCCATAAAAATCACTCGGAAATACAAATGTATCAGTGTGATATTTGTGAGTTGAAGACAAGACAGAAAGGAACTCTGCGGAGACATATGTTGACCCATAAAGACCGCTCAGAAATAGAAATGTACCAGTGTGGTATTTGTGAGCATAAGACGATACGTAAACATAGCCTGCGAAAACATATGTTGATCCATAAAGACCATTCAGATATAGAAATACACCAGTGTAATTTTTGTGCGTTTAAGTCGAAACTGAGAGGGAGCCTTCGAAGACATATGTTGACCCATAGAGACCACTCAAAAATACAAGTGTATCAGTGTGATATTTGTGAGTTGAAGACAAAATATAAGCAAAACCTGCTAAGACATATGTTGACCCATAAAGGCAGTTCAGAAACAGAAATGTACCAGTGTGATATTTGTGAGTTTAAGACGAAACGTAAACAACACTTACAAAAACATATGTTGATCCATAAAGACCAATCAGAAATAGAAATGCATCAGCGTGATATTTGTGAGTTGAAGACAGAATGTAAAGAAAACCTGGAAAGACATATGTTGACCCATAAGGACCACTCAGAAATAGAAATATATGAGTGTGTTTCTTGTTCATATCAAACGAAATATGAAAGTTACATGCAGGAGCACTTACTAACCCACAAACTCCCCACAGAAACAACAGACTAG
Protein Sequence
MGNLRRVICRLCLKKCVDFNFEAVQDYTKDVLEVLLLKINLTISEEPVMCTSCASRLMGCFDFKAMCFYTHDYIFPFLDDNVSKLDLKKVYMSKYEKVDIPEDYSVCGFCMGLLEKYTAVSLDSEEEGVKLQKLIEKCLPELDLSTIEEPMICASCYESLKTCFHFVTSCLIVEEEIMEYCKLTGADVIEIADVLQSTSIHASSVEGDGNTIDSISTEEKFCVDMGNADEQVGHENGSFGNMEEQKHVEIKADQHGFDRCSDGVISSQPVTTKLRGKRECSVLKKGSLRTTSKHKLAHKKYLENLKRHRELHVNPTEIKTYCCDCCSYRTKYRKCFKSHSLKHKSPSGVLIYRSKSCSRQTKYRRSLINKSTSEITIYQCGSCSFQTKLKTGIQHHMLTHILSANTTMYQCDICEFKTKHKRNLQQHMLTHKDRSEIEMYQCDICEFKTKRKHGLQGHMLTHKDLSDIELYQCDSCEFKAKHKESLQRHMMTHKDQSKIKLYQCNICGLKIKYKRNLQKHMLTHKDHSEIEMFQCAACTFKTRHKHSLQGHMLTHKDLSEIEMVRCDICGVKVKCKQYLQKHMLTHKDHSEVKMHQCSYCEFKTKRKYDLQRHMLAHKDKSEIKMHQCDICEFKTKHKDSLPRHILIHKNHSEIQMYQCDICELKTRQKGTLRRHMLTHKDRSEIEMYQCGICEHKTIRKHSLRKHMLIHKDHSDIEIHQCNFCAFKSKLRGSLRRHMLTHRDHSKIQVYQCDICELKTKYKQNLLRHMLTHKGSSETEMYQCDICEFKTKRKQHLQKHMLIHKDQSEIEMHQRDICELKTECKENLERHMLTHKDHSEIEIYECVSCSYQTKYESYMQEHLLTHKLPTETTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-