Rmor019774.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796658.1:26406829-26444388[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 2.3 2.7e+02 4.1 2.3 1 23 290 312 290 312 0.83
2 11 0.0058 0.66 12.4 4.2 1 23 382 405 382 405 0.94
3 11 0.00034 0.038 16.2 4.2 1 23 411 433 411 433 0.97
4 11 0.00062 0.071 15.4 0.4 1 23 450 473 450 473 0.97
5 11 2e-06 0.00023 23.2 3.9 1 23 479 501 479 501 0.98
6 11 0.00049 0.056 15.7 1.9 1 23 507 529 507 529 0.96
7 11 1.5e-06 0.00017 23.6 1.1 1 23 535 557 535 557 0.98
8 11 4e-05 0.0045 19.2 7.8 1 23 563 585 563 585 0.98
9 11 0.0031 0.35 13.2 3.5 2 23 592 613 591 613 0.97
10 11 0.00025 0.028 16.7 0.5 1 23 619 641 619 641 0.99
11 11 1.8e-07 2e-05 26.6 1.7 1 23 647 669 647 669 0.99

Sequence Information

Coding Sequence
ATGGAGACGGCGAATTTGTTGTGTAATTCATATTATTGTAGGTTATGCGCTGAAGAAAACAAAAATggaacatatttattttcaagtgaagaaaatttagataatttaagtctacttataaataaatatttaccacTTAAGATTGAAGATGACGAGAAATATCCCAAATATATATGCCCAGGTTGCCATATACAGCTAGAAGCCACAAAATCTTTTATGGACCTTATCATAGAAGGCCAAAAAAAGCTAAGACAATTTTATCGAATTCAACAAGAGATTTTACTAAGGGAAGAAAAGCAAAGGCAAAAATTAGAGGAAGTACTGCATACTGTTAACCCTAACAGTTCTGTTGAAACATATACTATACAGTCAGACGAAACTGGGGAAAAATTTCTTATACAAATATATTCTGATGGACCATTATTTCCTCCTGATCATGAACTATCCTTACGTGCAGAAGGTTTGGAGAAACCAAGAAGGAAAAGAGGTAGACCTCCCAAACAAGTGCCAGAATCAGGTAACGAGGAAAATGAAAGAGATTCTAAAAACGACCAGGAAGAAGTTATTCAGAAAGAAGACGAGAATGAAACTGATGCAGACGGTAGGAAACGTAGAAAAATTAGGGCTCCATCAAGATATCAAGGCATAGttcagGGGAAAGAACTAGATAAAATTTTCCAAGAAGAAGGTGTTATAGATGAAGAAGAAGTTGAGGTTAAAGAAATCCAAGTTTGTAATGATGTTGAAGAAGTAATAGGAAGAACTGAAACAGAAAACGGAGAAGATTTAGGAGAACCTGTATTTATAAATCGACCGAAATTCAAAATGAAAACTGgTTATTTTAGCAAGAGGAAGGGCAAAAAGAAATATCAATGTGAAATTTGCAAAAGGGAATTTTTACATTTAGGTCGTTACgatttacacaaaaaatcacATAGAATTCAGTATATTTGCCAGGAACCCGACTGTGGTGTTGAAAGTGAGGATAAAACATTAGTGGATAAGCATCAGTCTGAAACGGGACATACTGGAATTTCAGCTGTTGAGAGGTTCGAATCTGTAGGAGGAACTCTTCAATTTCCAGATAGTGCAGAagtagtaaaaattaatgaacCATCTTTAGCGGAACCTACTGAAACCCAACACAAATGTGAACAGTGTGACAAAACCTTCACCTGCAAACAAAACCTAGAAGTCCACAACCGTGCCGTACACAACCAAGAAAAACCATTTTGTTGTGATAAATGCAGCAAAAGTTTTTCCTATGCTAATAGTCTAAAGTTACATCTACTTAAGCATGAAAAAGAAGAAATACTGAACAAATCTGATACTAATCTTGCCAAGGAGTACCCCTGTGAAACCTGTGGTAAAGTATTACAACATCCGAGCAGCTTACTTTATCATCGGGAGACGGAGCACAGCAATGGAAGAAGATTTGTATGTAATAAATGTGACAAAAGCTTTAAACACAGACAGTTACTTCAACGTCATCAATTGGTACATACAGACGAAAGGCCATTTCATTGCCAGCAGTGTGATGCATCATTTAAAACCCATGCAAATCTGATTAACCATGAAGCAGTACATAcagGTCATAAGCCATATAGTTGTGATGTTTGCCATAAGGCATTTTCACAAAAGGGGAATCTTGCCGAACACAAAAGGATTCATACAGGAGAAAAACCGTATTGCTGTGATCACTGTGGACGATCTTTTACCACATCTTCGCAATTTAATTTGCATCGAAAGAGACATACTGGTGAACGACCATGGGTGTGCGAATATTGCTCAAAAACTTTCCTGCACAAAGACACATTTAAAACCCACGTACGCCGACACCTCAATGACCGGCCCTTCAAGTGCAAAAGTTGTCCTAGAGCTTTCACAGAAGGTTGGGCCCTTAAGAGGCATGAGCGAACTCACTCAGGGGAGAGACCATATACCTGTGAACAATGCGGAAAAACTTTTGCTGACAGTTCTAATAAATCCAAACATATGCGTACTCATAATACAGCCAACAATGTTAAACATATCTACAGCAACAGTGACGTAAAACCAGTTTACAGTAGGCCGGTGTTTGACATTAAGGATCCTTCTTTATTGCATGTCTTGGACCCAGCAATGAATGTAGAGAGGCAGAAAATTGACATTGAAGTGCCCGATTTGCATTTGACACAGTTAGTAGATCAACAAGGGAACCCCATTAGCATTACAACTCAAGATGGTCAGACTGTGCCGGTTGTGACTGGTTCCAACGATGAGAATAGTATACAAGGGCTTCTTCCTGATGGTACTTTGGTCCCTATTGAAATTACTACCATGCAAGAAAAAGACTTGATTcaggaagtaGGTGAAGAGGAAGATAGTACAGGTTTACTAAACCAGGaaatacaaaatgaaataaatattctcaaagaagaaataataaaaaccgACGACAACGTTGATGAAAATCAAAAACTGGATACTAATATACAGTTTTTAACTGGGGAAGATGGTCAAGAGGTGTGTTTAGTTACCTATGCAGTGGATGAAAACAACAGTATGAATCAGGATTTGGGAATCGACACTTTCCTCattcataatataaaaaagtag
Protein Sequence
METANLLCNSYYCRLCAEENKNGTYLFSSEENLDNLSLLINKYLPLKIEDDEKYPKYICPGCHIQLEATKSFMDLIIEGQKKLRQFYRIQQEILLREEKQRQKLEEVLHTVNPNSSVETYTIQSDETGEKFLIQIYSDGPLFPPDHELSLRAEGLEKPRRKRGRPPKQVPESGNEENERDSKNDQEEVIQKEDENETDADGRKRRKIRAPSRYQGIVQGKELDKIFQEEGVIDEEEVEVKEIQVCNDVEEVIGRTETENGEDLGEPVFINRPKFKMKTGYFSKRKGKKKYQCEICKREFLHLGRYDLHKKSHRIQYICQEPDCGVESEDKTLVDKHQSETGHTGISAVERFESVGGTLQFPDSAEVVKINEPSLAEPTETQHKCEQCDKTFTCKQNLEVHNRAVHNQEKPFCCDKCSKSFSYANSLKLHLLKHEKEEILNKSDTNLAKEYPCETCGKVLQHPSSLLYHRETEHSNGRRFVCNKCDKSFKHRQLLQRHQLVHTDERPFHCQQCDASFKTHANLINHEAVHTGHKPYSCDVCHKAFSQKGNLAEHKRIHTGEKPYCCDHCGRSFTTSSQFNLHRKRHTGERPWVCEYCSKTFLHKDTFKTHVRRHLNDRPFKCKSCPRAFTEGWALKRHERTHSGERPYTCEQCGKTFADSSNKSKHMRTHNTANNVKHIYSNSDVKPVYSRPVFDIKDPSLLHVLDPAMNVERQKIDIEVPDLHLTQLVDQQGNPISITTQDGQTVPVVTGSNDENSIQGLLPDGTLVPIEITTMQEKDLIQEVGEEEDSTGLLNQEIQNEINILKEEIIKTDDNVDENQKLDTNIQFLTGEDGQEVCLVTYAVDENNSMNQDLGIDTFLIHNIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-