Rmor047070.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
-
Assembly
GCA_963680705.1
Location
OY796663.1:6512698-6517951[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.9 2.2e+02 4.4 2.6 1 23 399 421 399 421 0.98
2 18 3e-05 0.0034 19.5 3.9 1 23 430 452 430 452 0.99
3 18 0.00069 0.078 15.3 2.0 1 23 461 483 461 483 0.98
4 18 0.00043 0.049 15.9 2.2 1 23 492 514 492 514 0.98
5 18 5e-06 0.00056 22.0 2.2 1 23 523 545 523 545 0.99
6 18 0.00018 0.02 17.1 3.6 1 23 554 576 554 576 0.98
7 18 0.016 1.8 11.0 4.9 1 23 585 607 585 607 0.99
8 18 0.056 6.4 9.2 6.3 1 23 616 638 616 638 0.99
9 18 0.29 33 7.0 4.6 1 23 647 669 647 669 0.97
10 18 0.006 0.68 12.3 0.9 1 23 678 700 678 700 0.99
11 18 0.005 0.57 12.5 2.2 1 23 709 731 709 731 0.99
12 18 0.00047 0.054 15.8 1.5 1 23 740 762 740 762 0.98
13 18 5.5e-06 0.00062 21.9 2.8 1 23 771 793 771 793 0.99
14 18 8.1e-05 0.0093 18.2 2.6 1 23 802 824 802 824 0.98
15 18 0.019 2.2 10.7 0.7 1 23 833 855 833 855 0.99
16 18 0.00025 0.029 16.6 3.0 1 23 864 886 864 886 0.99
17 18 3.6e-06 0.0004 22.5 1.1 1 23 895 917 895 917 0.99
18 18 4.6e-05 0.0053 18.9 3.6 1 23 926 948 926 948 0.99

Sequence Information

Coding Sequence
ATGTGCGTTGATTGTGCCAATTGCCTTCAAACATTATCAAATTTCACGCCAGGCTGTGCTTATATGGGGGACGGGACGTTGCGTTTATCTGATCTCAAAAATGGCATCAAGTTGGAAACCGAACCGAGTGAAACTACAAACAATCCAAAGTCCTTTCTGAAAACGGAAATAAAATGCAGTATTTGTACAAAGGCTCATGGAAGAGAAGATCTTATATCTTTGCAAGTTTCAAAGGAAAACAAGTTTTTGCTGGAGCAATACATTTCGGAGACGaatttaaaaaacaccgaagAGCTTTTAACCTGCGAAACTTGTTTTAAGCCACTGAAAGGCattttgagtgttatttcgaaGTGTTTAGAGGTGGAGGAaaagataagtaaatatattgaattagagggaacggatgataaaggccaagtagaactaaggaaagtacaacagtttgtgttcaaactaattttaaaatcggaAATAGAGTCGTGTGGCGTGAATGAATTAGAAGATAGATCCGATCAACTTCAAGAAGAATATACCACGCTGGGTGAAGTCgaaataaaatacgaaaaagAAGTACGTAACACAGAGTTGGTTATTAAGACAGATGAGGATGATATCACTTCGGAACAAGGCGATTGTGATATCCCCGATATCAAATCAGAGCAGCACAGTGAAGTAGAAGGAGATGGTAATACGATTGACAGTATCAATacagaagaaaaattttgtgtCGATATGGGCAACGTTGACGAACAGGTTGGACACGAAAACGGCAGTTTTGGCAACATGGAGGAACAAAAGCGTGTTGAAATAAAAGCGGAACAACATGGTTTTGACGgATGTTCAGATGGTGTTATTTCATCACAACCAGTTACTACTAAGTTACGTGGAAAACGAGAATGTTCAGTGTTAAAAAGAGGTCCATTAAGAACTACCAGTAAACACAAACTGGCACACAAAACATATTTAGAAAATCTTAAAAGACATCGAGAACTTCATGTGAATcctacagaaataaaaacgtACTGCTGTGACTGCTGTTCTTATCGGACAAAATACAGAAAGTGTTTTAAAAGCCATTCTCTAAAGCACAAGAATCCATCGGGGGTACTAATATACCGGTCCAAGTCCTATTCACGACAAACAGAATATCGATGTAGTCTTATTAATAAGAGCACCTCAGAAATAACAATCTACCAGTGTGGTTCTTGTTCATTTCAGACGAAACTTAAAACTGGGATCCAACACCACATGTTAACCCACAAACTCTCCGCAAACATGGCGATGTATCAGTGTGATATTTGTGAGTTTAAGACAAAACGTAAACATGACCTGCAAAGACATATGTTGACCCATAAAGATaagtcagaaataaaaatgcaCCAGTGTGATATTTGTGAGTTTCAAACAAAACGTAAAGACAGTCTGCAGGGACATAtgttgacccacaaaaatcatTCAGAAATAGAAATGTACCAGTGTGATATTTGTGAGTTTAAGACAAAACTTAAAAGAAACCTGAAAAGACATATGTTGAACCACAAAGATCACTCAGAAATAGAAATGTACCAGTGCGATATTTGTGAGTTGAAGACAAAACGTAAAAGAAACCTGAAAAGACATATGTTGACCCATAAAGATCAGTCAgatataaaaatgtatcattGTGATATCTGTGGGTTTCAAACAAAACATAAAGGAGGTCTGCAAAGACATATGTTGACCCATAAAGACGTTTCAGAAATAGAAATGTATCAGTGTGATTTTTGTGAGTTTAagacaaaacataaatataGCGTGCAAAGCCATATGTTGACCCATAAAGACCAGTCAGAAATAGAAATATACCAATGTGATTCTTGcgattttaaaacaaaacataaatgtACCCTGCAAGGACATATGCTGACCCATAAAGATCTCTCGGACATAGAAATGTTTCATTGTGATATTTGTGGTTTTAaggtaaaatgtaaaaaatacctTGTAAAACATATGTTGATTCATAAAGGCCACTCAGAAACAGAAATGTACCAGTGTGCGGCTTGTCCATTTaagacaaaatataaacaaagcCTGCAAGAACATATGTTGACCCATAAAGACCACTCAGAAATAGAAATGTACCAATGTGATATTTGTGAGTTTAAGACGAAACATAAACGAAACCTGCCAATACATATGTTGACCCATAAAGAtcattcagaaataaaaatgcaCCAGTGTGATATTTGTGAATTTCAATCAAAACGTAAAGAAGGTCTGCAAAGACATATGTTGATCCATAAAGACGATTCAGAAATAGAAATGTATCAATGCGATATTTGTCAGTTGAAGACAAAACGTAAAAGAAACCTGAAAAGACATATGTTGACTCATAAAGATCagtcagaaataaaaatgcaCCAGTGTGATATTTGTGAATTTCAAACAAAACGTAAAGAAGATCTTCAAAGACATATGTTGACCCATAAAGACCACTCAGAAATAGAAATGTACCAGTGTGCGGCTTGTCCATTTaagacaaaatataaacaaagcCTGCAAGGACATATGTTGACCCATAAAGACAGCTCAGAAATAGAAATGTATCAGTGTGATATTTGTGAGCATAAGACGAAACGTAAACAAGACCTGCAAAAACATGTGTTGACCCATAAAGACCACTCAGAAATACAAATGTATCAGTGTGATATATGTGAGTTGAAGACAAGACAAAAATCAAACCTGCAAAGCCATATGTTGACTCATAAAGACAGCTCAGAAATAGCAATGTATCAGTGTGATATTTGTGAGCATAAGACGAAACGTAAACAAGACCTGCAGAAACATATGTTGACCCATAGAGACCACTCAGAAGTAGAAATGTATCAGTGTGTTTCTTGTTCATATCAGGCGaaacataaaaattgcattcGAAAGCATGTACTAACTCACAACCTCTCCGCAGAAAAAACGATGTGCCAGTGTGATATTTGTGAGTTTAAGACAAAACATAAAGAAATCTAA
Protein Sequence
MCVDCANCLQTLSNFTPGCAYMGDGTLRLSDLKNGIKLETEPSETTNNPKSFLKTEIKCSICTKAHGREDLISLQVSKENKFLLEQYISETNLKNTEELLTCETCFKPLKGILSVISKCLEVEEKISKYIELEGTDDKGQVELRKVQQFVFKLILKSEIESCGVNELEDRSDQLQEEYTTLGEVEIKYEKEVRNTELVIKTDEDDITSEQGDCDIPDIKSEQHSEVEGDGNTIDSINTEEKFCVDMGNVDEQVGHENGSFGNMEEQKRVEIKAEQHGFDGCSDGVISSQPVTTKLRGKRECSVLKRGPLRTTSKHKLAHKTYLENLKRHRELHVNPTEIKTYCCDCCSYRTKYRKCFKSHSLKHKNPSGVLIYRSKSYSRQTEYRCSLINKSTSEITIYQCGSCSFQTKLKTGIQHHMLTHKLSANMAMYQCDICEFKTKRKHDLQRHMLTHKDKSEIKMHQCDICEFQTKRKDSLQGHMLTHKNHSEIEMYQCDICEFKTKLKRNLKRHMLNHKDHSEIEMYQCDICELKTKRKRNLKRHMLTHKDQSDIKMYHCDICGFQTKHKGGLQRHMLTHKDVSEIEMYQCDFCEFKTKHKYSVQSHMLTHKDQSEIEIYQCDSCDFKTKHKCTLQGHMLTHKDLSDIEMFHCDICGFKVKCKKYLVKHMLIHKGHSETEMYQCAACPFKTKYKQSLQEHMLTHKDHSEIEMYQCDICEFKTKHKRNLPIHMLTHKDHSEIKMHQCDICEFQSKRKEGLQRHMLIHKDDSEIEMYQCDICQLKTKRKRNLKRHMLTHKDQSEIKMHQCDICEFQTKRKEDLQRHMLTHKDHSEIEMYQCAACPFKTKYKQSLQGHMLTHKDSSEIEMYQCDICEHKTKRKQDLQKHVLTHKDHSEIQMYQCDICELKTRQKSNLQSHMLTHKDSSEIAMYQCDICEHKTKRKQDLQKHMLTHRDHSEVEMYQCVSCSYQAKHKNCIRKHVLTHNLSAEKTMCQCDICEFKTKHKEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-