Rmor018358.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- Znf219
- Assembly
- GCA_963680705.1
- Location
- OY796658.1:142299-144164[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.091 10 8.6 0.9 3 23 122 143 121 143 0.96 2 11 0.032 3.7 10.0 7.8 1 23 145 168 145 168 0.95 3 11 1.7e-05 0.002 20.3 1.7 2 23 179 200 178 200 0.97 4 11 6.4e-06 0.00073 21.6 1.3 1 23 206 228 206 228 0.98 5 11 2.5e-05 0.0029 19.8 3.5 1 23 234 256 234 256 0.97 6 11 0.0011 0.13 14.6 2.0 1 23 262 284 262 284 0.97 7 11 3.7e-07 4.2e-05 25.6 1.1 1 23 290 312 290 312 0.97 8 11 1e-05 0.0012 21.0 2.0 2 23 338 359 337 359 0.98 9 11 0.00038 0.044 16.1 3.8 1 23 365 387 365 387 0.97 10 11 3.5e-06 0.0004 22.5 0.5 1 23 393 415 393 415 0.96 11 11 0.003 0.34 13.2 0.4 1 21 421 441 421 442 0.95
Sequence Information
- Coding Sequence
- ATGGATTTATGTAGAGTTTGTTTAGGCGATTCAGATTTATCAGACATATTTGGCACTGACGAAGATGTTGCActaaatattacattatttgCTTCGGTGCAGgtAGTCCATGGAGATAATTTGCCCCAACATATCTGTAAATTGTGTAAAATTGAGCTTGATATATGTCtgagttttaaaaataagtgtGAAACGTCATATAATACTTTAAAAGATATGTGCGGTAAAGAAGTTGCTAGTTTAAATAAGGATAAAGATCCATGTGTTGCTGAACAGAATGACCAAGAAGTACAATCTGGCGAATCTGGAATTGTTTTTGAAGCCGTCGCTAAAGAATCTGCACAAAAAGTTACAAATAATGATTGTCGACAATGCAATTTACGTTTTCCTTCTGACAGATCGtttaatatacatatagagAAGAGACATAGGCATATATGTAATGTTTGTCATTTGCACTTTGATTATCAAAAGCATTTAACACTCCATTTGAAAAATGAGCATAATGTAGTGGTTAAGGTTGAGAAGTCCAAACAGTGCCATATTTGTGGTAAACGTTTTCAATACAATGCAGAATTAGTGAGGCATACATTAATGCATTCTGGCATTAAACAGTTCAAATGTAATCaatgtgataaatatttttcttcaagAGGAGGTTTAAACAAACATGTAGCAAAACATAGTGGCATACGAAAGTTTGCCTGTCCCATGTGTAGTAAAATGTTCATCCATCAGAGCAACTTACATGATCATAAGAAAGTTCACTCTAATGAGAGAAGACATGTTTGTGACATTTGTTCAAAGGCATTTAAAACAAGGCGTACCTTACTTTTTCATATCAAAATACACAATAATGAGCGAGATTTTCCTTGTTCTGAGTGTAATAAGGCCTTTACGAATAAGTATGATTTATTTCGGCATTTGAATTTACACGAAGAAAAGAAACTGAGAGCAAATGGAATGCTCATTGCTTCAGAAGTGCAAGAAAAGAAAACGCATATGTTAAGTCAGTGTGAACTCTGCGGCAGATTTTGTCGAAACGTCAGTGATCTCAAAAGACATATTCGAGTGCATACAGGTGAAAGGCCTTTCGATTGTCctcattgtgaaaaaacgtttAAGAGCACAAGTGCACTGAATTGCCACGTAAGGATACATACTCAGgaGAAACCTTTTGTATGCAAGTCCTGCGGTAAAGGTTTTGTTCAGTCTTCGAACTTACGTACTCACGAAACGATCCATGCTCCAGTTAAACCTTTTAGTTGTGATATATGTGCTCGATATTTCAATAGAAAAAGAGATGTACTGCGCCATATGGAAAAATGTATGAAACAGGAACACTCTTGTGAAAGCGAtgactaa
- Protein Sequence
- MDLCRVCLGDSDLSDIFGTDEDVALNITLFASVQVVHGDNLPQHICKLCKIELDICLSFKNKCETSYNTLKDMCGKEVASLNKDKDPCVAEQNDQEVQSGESGIVFEAVAKESAQKVTNNDCRQCNLRFPSDRSFNIHIEKRHRHICNVCHLHFDYQKHLTLHLKNEHNVVVKVEKSKQCHICGKRFQYNAELVRHTLMHSGIKQFKCNQCDKYFSSRGGLNKHVAKHSGIRKFACPMCSKMFIHQSNLHDHKKVHSNERRHVCDICSKAFKTRRTLLFHIKIHNNERDFPCSECNKAFTNKYDLFRHLNLHEEKKLRANGMLIASEVQEKKTHMLSQCELCGRFCRNVSDLKRHIRVHTGERPFDCPHCEKTFKSTSALNCHVRIHTQEKPFVCKSCGKGFVQSSNLRTHETIHAPVKPFSCDICARYFNRKRDVLRHMEKCMKQEHSCESDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -