Rmor000712.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796656.1:1680661-1700937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0092 1 11.7 0.6 3 20 27 44 25 45 0.95 2 15 0.16 18 7.8 0.1 1 19 54 74 54 77 0.94 3 15 0.00024 0.027 16.7 6.2 1 21 97 117 97 118 0.95 4 15 0.004 0.46 12.8 0.3 1 23 126 149 126 149 0.97 5 15 8.7e-05 0.0099 18.1 1.0 1 21 155 175 155 176 0.95 6 15 0.0083 0.94 11.9 0.9 1 21 184 204 184 205 0.93 7 15 0.0078 0.88 11.9 3.3 1 21 207 227 207 228 0.95 8 15 2.4e-05 0.0027 19.8 3.5 1 22 236 257 236 257 0.96 9 15 0.00075 0.085 15.1 3.4 1 21 273 293 273 294 0.94 10 15 4.9e-06 0.00056 22.0 1.3 1 20 303 322 303 324 0.94 11 15 0.034 3.8 9.9 2.2 1 21 363 383 363 384 0.95 12 15 5.6e-05 0.0064 18.7 0.6 1 21 411 431 411 432 0.93 13 15 0.0021 0.23 13.8 0.2 1 21 459 479 459 480 0.95 14 15 0.0005 0.057 15.7 1.4 1 21 502 522 502 523 0.95 15 15 0.05 5.7 9.4 9.1 1 23 531 554 531 554 0.97
Sequence Information
- Coding Sequence
- ATGAGAGTCATGCGGCATGCTCTTAAATGTGACTTTAAGATAAGAGCGAAACGCCTGGCGCGTGCTTACCCATATGGATGTGATCGATGTGGTAAAAGATACAAATATTCTAAAGGCTTGAAAGAGCACAGAACATTTTCGTGTGGTAAGGCGGCCCAGTTTTCATGCCCGGAACCAAATTGTAACTACAGGGCATCGTTGAAAGGAAACCTGAAGAAGCACGGTTTGGTTGTAATGTCTGTGGGAAACCGTACAAACACTATCCATCCCTCTGGAGGCATAAGAAgcTATAAGTGCTCCATTTGCGGAAAATGCTACAAACAGAACTGTTCATTGTGGAGACACAAGAAGTACGAGTGCCAAAAGCCCCCGACGTTCAAGTGCGACTTCTGCCCGTACATGTCGAAACAAAAGGCGCCACTTGTTAGCCATATGATAATCAAACATAATTATGTCAGTTATCACGTGTGCGAGGTATGTGGCAAGATGTACAAACACAAGGAATCCTTGGGGAAGCATATCAAATACGAATGTCAAAAAGAACCAAAGTTCCCGTGCTTATACTGTTCGTACAGATCAAAGTTGAAGAGCAACCTCAAAAAGCACGTTTTAAGTCGATACAGATGCCCTCAGTGCGGGTCTCACTACAAGTACGAGAAAACCTTGAAGCGTCATTTTCGCTACGAATGTGGAGTGGAACCGATGTTCCCCTGTCCTCATTGTCTAAAGAAATTTAAACACAACACCAACCTTCAAAACCATCTGAGAAAGTTGAGGTGTAAAGatttgtattattttatcacAGCTGACGGGCGTTTCGCCTGCCAAATGTGCGGGCATTCGTACAAGAGGAAGCAGCATTTGTACAGGCACGTCAAGTACGAATGCGCCACGTCGGAGAGGGTCTTCTCGTGCAATATCTGCGACCGCAAGTTTAAGCAGAAGAATCATCTGATCCGTCATCTGGCGTCCGAGGTGTGTCTGAAGAAGAAAAAATATAAGCTACTGTTAATTTTTGCAACAAACCAGCTTTTTGAACTAGAATTCCTCAATGGAGAACTTTACTATGTGACGGATGAAGGCCGTTTCGCCTGTCGCAAGTGTGGCCTCTCGTACAAATGGAAAAAGCACTTATTTAGACATACTAGAGATGAGTGCGCATCGATTGAGAGAAATTTTAGTTGCACCAACTGTGATCATTTACTTTATGCCGTGACAGACGATGGACGTCATGCTTGTCAAGTCTGTGGGAAGTCGTACAAAAGACGGCGCGAACTGGTGAGGCATGCTAGATACGAATGTTCTACAGTAGAAGGAACGTTTGCTTGCAATAATTGCGATCCGAGACTGTATCCGAGGACACAAGATGGACAATACGCATGCTTAATATGtggaaaattattcaaatggaaGGGGAATTTAACCAAGCACGTTCGGTACGAATGTGCCACAGTGGAAAGACACTTCGCTTGTGGTAACTGTGACCGCCTTAGAGCGGATACGTTCCCTTGTAAGCGTTGCGGGAAACTGTACAAGTACAAAAGTTCCTTGTACAAGCATCTGAAGTGGGAGTGCGGCGTAGAGTCGCAGTTTAAATGCACCATGTGCGACCATTCCTGCAAACAAAAGATACATTTCATCTACCACATGGACCGCAAGCACAATGTGCCCAAGGAGCagctgatattttattaa
- Protein Sequence
- MRVMRHALKCDFKIRAKRLARAYPYGCDRCGKRYKYSKGLKEHRTFSCGKAAQFSCPEPNCNYRASLKGNLKKHGLVVMSVGNRTNTIHPSGGIRSYKCSICGKCYKQNCSLWRHKKYECQKPPTFKCDFCPYMSKQKAPLVSHMIIKHNYVSYHVCEVCGKMYKHKESLGKHIKYECQKEPKFPCLYCSYRSKLKSNLKKHVLSRYRCPQCGSHYKYEKTLKRHFRYECGVEPMFPCPHCLKKFKHNTNLQNHLRKLRCKDLYYFITADGRFACQMCGHSYKRKQHLYRHVKYECATSERVFSCNICDRKFKQKNHLIRHLASEVCLKKKKYKLLLIFATNQLFELEFLNGELYYVTDEGRFACRKCGLSYKWKKHLFRHTRDECASIERNFSCTNCDHLLYAVTDDGRHACQVCGKSYKRRRELVRHARYECSTVEGTFACNNCDPRLYPRTQDGQYACLICGKLFKWKGNLTKHVRYECATVERHFACGNCDRLRADTFPCKRCGKLYKYKSSLYKHLKWECGVESQFKCTMCDHSCKQKIHFIYHMDRKHNVPKEQLIFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -