Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796663.1:601047-602945[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.4 1.6e+02 4.8 0.8 2 23 115 136 114 136 0.94

2 11 3.5e-05 0.004 19.3 3.7 1 23 141 163 141 163 0.99

3 11 4.3e-06 0.00049 22.2 0.3 3 23 171 191 169 191 0.96

4 11 1.4e-05 0.0016 20.5 0.9 1 23 197 219 197 219 0.98

5 11 2e-07 2.3e-05 26.4 2.4 1 23 225 247 225 247 0.99

6 11 0.0013 0.15 14.4 0.9 2 23 256 277 256 277 0.98

7 11 2e-05 0.0023 20.1 2.4 1 23 290 312 290 312 0.99

8 11 0.0001 0.012 17.8 0.8 1 23 317 339 317 339 0.97

9 11 0.00014 0.016 17.4 2.2 1 23 345 367 345 367 0.97

10 11 0.04 4.5 9.7 1.5 1 23 374 397 374 397 0.92

11 11 8.2e-05 0.0094 18.2 4.0 1 23 403 425 403 425 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.4	1.6e+02	4.8	0.8	2	23	115	136	114	136	0.94
2	11	3.5e-05	0.004	19.3	3.7	1	23	141	163	141	163	0.99
3	11	4.3e-06	0.00049	22.2	0.3	3	23	171	191	169	191	0.96
4	11	1.4e-05	0.0016	20.5	0.9	1	23	197	219	197	219	0.98
5	11	2e-07	2.3e-05	26.4	2.4	1	23	225	247	225	247	0.99
6	11	0.0013	0.15	14.4	0.9	2	23	256	277	256	277	0.98
7	11	2e-05	0.0023	20.1	2.4	1	23	290	312	290	312	0.99
8	11	0.0001	0.012	17.8	0.8	1	23	317	339	317	339	0.97
9	11	0.00014	0.016	17.4	2.2	1	23	345	367	345	367	0.97
10	11	0.04	4.5	9.7	1.5	1	23	374	397	374	397	0.92
11	11	8.2e-05	0.0094	18.2	4.0	1	23	403	425	403	425	0.99

Sequence Information

Coding Sequence: ATGGAACTGGTAGAATCAACACTGACGAAGATAAAAGATGAATTCGAGAACCTGAACGGAGATAGACCAGAGTTTGTGAAAATCAAAGAGGAAATTGAAGACGTAAACACCGATGGATACGATTTTCCGGTCTGCAGAGACGTATCAAACGGTGAAAACCTTACAAACGCCTTCCCTGCGACCCGCGAAGTTAAAATCGAGCCTTGCGAAACTAGAGAAGTAAAGGAAGAGAATTACGAAGACGCAACAGTTGCTGCGAATTCTTGCATGGTAGAAATTAAAGAGCTACAGAATACTAGTTATCAACTGGCAAACTTGAAGAAGCTCCTCAACCCTGGAATAACATGTGGAGAATGTGGTTTATGGTGCCGTGATAGAAGGACCTACAAGTTACACGTTATGGACCATACGGGACGACCATTCAAGTGTACCGAGTGCGATAAATCTTACAAGAAGTCAACGGACTTGCTTTACCACAAGAAGACACACACTGGCGATCATGACATACACTGCGAGGCGTGTGGCAAGGGCTTCGCAGTCAAGAGCGCTCTGAGGGCCCACATGAGGACCCATTCCAAAGAGAAGCCCTACGTCTGCCAGGTTTGTAACAAGGGCTTCTCCCACAGCTCTAGCTTAAAACCGCACATGGCGATGCACAGCGAGGACCTCCCCTACGAGTGCCCAGAATGCGACAAGAAATTTAAAACCAGCAAGAATCTCAGCACCCATAAGCGAAGCCACACGGCGGAAGGCGAGAGAGGCGAGCAGTGCAACTTCTGCCCCAAGCTCTACAAATCCAAAGAGGGCTTACGACTGCACCTGCTCAAACACAAGCAGCCGCTGACGCCGGCCGCCGACGCACCGATATTCACCTGCGAACAGTGCGGAAACTCGTACAAACACGCCATCAGCTTGAAGAACCACCTGCGGACCCACAACGGCAATATGTTCGCTTGCCACATGTGCGGCAAGTCCTACATAACCCTAAAGCTGCTGGATATCCACGTCAGGAACCACACAGGCGAGACGCCCTTCGACTGCACCGTGTGCGGCAAGAAGTTCAAGAGGAGGGACAGTTGGCTGTACCACAAGACGACCCACCAGGACGACAGGAAGAGGTACAAATGCGACATGTGCGATAAAGTGCTGGTGTGCAAGAGCGGCCTGCGGGTGCACAAGACCTACGTGCACACCAACGGAAAGCCGTTCCGATGCGAATATTGCCTCCAGTCGTACAAGTTCCGCTACGACCTAACGAGGCACTTGAGGAAGCACAAGAAAAAAGACGAGGAGGACGCCGAGGAAAAACTAGCCGAGGAGTGCCCTCCGATCCCCGAGACGGTGATCGTAAAAGAAGAAGCGAATTGTAAAGTGGAGGAGCCCAGTAGTGCAGGGGTCGACGTTGTTAAAGTATTCAAGTGCAAATGCAACGGTCTGTTCGATAGTGAAAGCGAGTTCAAAAAACACAAACTGTACGAGTGCGCCGTCGTTAAAATCGAAAACGAGGGAGATGAAGGTAGCAATAAGGCGGTTACGAAACATATTAAAGAGGAAGTCACCGTGAAGGCGGAGAAGAACTGCGAGGATAGTTGA
Protein Sequence: MELVESTLTKIKDEFENLNGDRPEFVKIKEEIEDVNTDGYDFPVCRDVSNGENLTNAFPATREVKIEPCETREVKEENYEDATVAANSCMVEIKELQNTSYQLANLKKLLNPGITCGECGLWCRDRRTYKLHVMDHTGRPFKCTECDKSYKKSTDLLYHKKTHTGDHDIHCEACGKGFAVKSALRAHMRTHSKEKPYVCQVCNKGFSHSSSLKPHMAMHSEDLPYECPECDKKFKTSKNLSTHKRSHTAEGERGEQCNFCPKLYKSKEGLRLHLLKHKQPLTPAADAPIFTCEQCGNSYKHAISLKNHLRTHNGNMFACHMCGKSYITLKLLDIHVRNHTGETPFDCTVCGKKFKRRDSWLYHKTTHQDDRKRYKCDMCDKVLVCKSGLRVHKTYVHTNGKPFRCEYCLQSYKFRYDLTRHLRKHKKKDEEDAEEKLAEECPPIPETVIVKEEANCKVEEPSSAGVDVVKVFKCKCNGLFDSESEFKKHKLYECAVVKIENEGDEGSNKAVTKHIKEEVTVKAEKNCEDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -